Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26880 | 5' | -61.7 | NC_005809.1 | + | 9203 | 0.66 | 0.327982 |
Target: 5'- gCC-UGCUCggcgGCGCGGcGCacguucugCGGCGCGCc -3' miRNA: 3'- aGGuACGAG----CGCGUC-CGg-------GUCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 35855 | 0.66 | 0.327196 |
Target: 5'- gCCGUGCUCaaGCAGaugcgcGCCCaggacaaGGUGUGCc -3' miRNA: 3'- aGGUACGAGcgCGUC------CGGG-------UCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 28566 | 0.66 | 0.32019 |
Target: 5'- gCCAUcGCggCGCGCAcgucGGCcaCCGGCaGCGUg -3' miRNA: 3'- aGGUA-CGa-GCGCGU----CCG--GGUCG-CGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 24760 | 0.66 | 0.32019 |
Target: 5'- cCCGaggGUUcCGUGCAGGCggaauaCuGCGCGCg -3' miRNA: 3'- aGGUa--CGA-GCGCGUCCGg-----GuCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 19148 | 0.66 | 0.32019 |
Target: 5'- aUCCcgGCcggCGuCGCAcugaCCGGCGCGCu -3' miRNA: 3'- -AGGuaCGa--GC-GCGUccg-GGUCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 8238 | 0.66 | 0.32019 |
Target: 5'- gCCGUcagcaGCUUGCGCuucaagcGGCCCAG-GUGUu -3' miRNA: 3'- aGGUA-----CGAGCGCGu------CCGGGUCgCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 6693 | 0.66 | 0.312539 |
Target: 5'- gCCA---UCGUGCAGGCacaccuuguCCugGGCGCGCa -3' miRNA: 3'- aGGUacgAGCGCGUCCG---------GG--UCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 1878 | 0.66 | 0.312539 |
Target: 5'- cCCGUgGC-CgGCGCuGGCCgGGUGgGCg -3' miRNA: 3'- aGGUA-CGaG-CGCGuCCGGgUCGCgCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 20058 | 0.66 | 0.312539 |
Target: 5'- -gCGUGCUCGCuGCGGGgaugaUGGCGgGCa -3' miRNA: 3'- agGUACGAGCG-CGUCCgg---GUCGCgCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 13001 | 0.66 | 0.312539 |
Target: 5'- gCCGUuCUCGUaCAGGCCgcgCAGCGCa- -3' miRNA: 3'- aGGUAcGAGCGcGUCCGG---GUCGCGcg -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 36819 | 0.66 | 0.305026 |
Target: 5'- gCC---CUgGCGCAcucgcuGCCCGGCGCGCu -3' miRNA: 3'- aGGuacGAgCGCGUc-----CGGGUCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 38164 | 0.66 | 0.297653 |
Target: 5'- aCCuacgacUGC-CGCacGCucaAGGCCCGGCGCGa -3' miRNA: 3'- aGGu-----ACGaGCG--CG---UCCGGGUCGCGCg -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 23717 | 0.66 | 0.297653 |
Target: 5'- cCCA-GgUCGCGggcCAGuGCCUcgguGGCGCGCa -3' miRNA: 3'- aGGUaCgAGCGC---GUC-CGGG----UCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 9249 | 0.66 | 0.296195 |
Target: 5'- gCCGUGCcggauucgccaGCGguGGCCguGC-CGCg -3' miRNA: 3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 9105 | 0.66 | 0.296195 |
Target: 5'- gCCGUGCcggauucgccaGCGguGGCCguGC-CGCg -3' miRNA: 3'- aGGUACGag---------CGCguCCGGguCGcGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 41476 | 0.66 | 0.293296 |
Target: 5'- -aCAUGC-CGCGCGacacGGCCaaggcaaucuaccGCGCGCg -3' miRNA: 3'- agGUACGaGCGCGU----CCGGgu-----------CGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 23756 | 0.66 | 0.290419 |
Target: 5'- gCCAUGCcggCGCcacCGGGCCgAuGCGcCGCg -3' miRNA: 3'- aGGUACGa--GCGc--GUCCGGgU-CGC-GCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 2824 | 0.66 | 0.290419 |
Target: 5'- gCCAggUGCUCGCGgcCAcGCgCAGCgGCGCc -3' miRNA: 3'- aGGU--ACGAGCGC--GUcCGgGUCG-CGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 21392 | 0.66 | 0.290419 |
Target: 5'- aCCAgcagcagGCcgCGCaGCAGGCcgcgcuguugaaCCAGgGCGCg -3' miRNA: 3'- aGGUa------CGa-GCG-CGUCCG------------GGUCgCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 35976 | 0.66 | 0.290419 |
Target: 5'- gCCAUGCUCuacgugGUGCcGGCCguGCuGgGCu -3' miRNA: 3'- aGGUACGAG------CGCGuCCGGguCG-CgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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