miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
269 5' -62.7 AC_000008.1 + 8472 0.66 0.255341
Target:  5'- uUGGUGGCGGCGucgauggcuuGCAagaggccgcauccccGCGGC-GCGACu -3'
miRNA:   3'- gGCCGCCGUCGC----------CGU---------------CGCCGuCGUUG- -5'
269 5' -62.7 AC_000008.1 + 12078 0.66 0.246366
Target:  5'- cCUGGCuGGCAcgGGCAGCGGCGaUAGa -3'
miRNA:   3'- -GGCCG-CCGUcgCCGUCGCCGUcGUUg -5'
269 5' -62.7 AC_000008.1 + 4541 0.66 0.246366
Target:  5'- gCGGCGGCAGCcaCAGUuagGGCuucugaGGUAACu -3'
miRNA:   3'- gGCCGCCGUCGccGUCG---CCG------UCGUUG- -5'
269 5' -62.7 AC_000008.1 + 10250 0.66 0.222158
Target:  5'- -aGGUaGCAGUGGCcccaaAGCGGCGGagGGCa -3'
miRNA:   3'- ggCCGcCGUCGCCG-----UCGCCGUCg-UUG- -5'
269 5' -62.7 AC_000008.1 + 8635 0.66 0.220426
Target:  5'- -aGGgGGCAGgGGCAcgucggcgccgcgcGCGGgCAGgAGCu -3'
miRNA:   3'- ggCCgCCGUCgCCGU--------------CGCC-GUCgUUG- -5'
269 5' -62.7 AC_000008.1 + 11044 0.67 0.216431
Target:  5'- uCCGGU-GCuGCGGCAgauGCGccccccuccucaGCAGCGGCa -3'
miRNA:   3'- -GGCCGcCGuCGCCGU---CGC------------CGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 11145 0.67 0.216431
Target:  5'- -gGGCGaCAuccGCGGUugacGCGGCAGCAGa -3'
miRNA:   3'- ggCCGCcGU---CGCCGu---CGCCGUCGUUg -5'
269 5' -62.7 AC_000008.1 + 33191 0.67 0.200004
Target:  5'- -aGGauagGGCGGUGGU-GCuGCAGCAGCg -3'
miRNA:   3'- ggCCg---CCGUCGCCGuCGcCGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 30467 0.67 0.193229
Target:  5'- gCaGCGccugcuagaaagacGCAG-GGCAGCGGCcgAGCAACa -3'
miRNA:   3'- gGcCGC--------------CGUCgCCGUCGCCG--UCGUUG- -5'
269 5' -62.7 AC_000008.1 + 6392 0.67 0.189665
Target:  5'- --uGUGGUAGauguaagucCGGUAGCGGCGGCcGCg -3'
miRNA:   3'- ggcCGCCGUC---------GCCGUCGCCGUCGuUG- -5'
269 5' -62.7 AC_000008.1 + 1677 0.68 0.179799
Target:  5'- gCGGUGGUGGauguuaucagGGCAGCGGC-GCAu- -3'
miRNA:   3'- gGCCGCCGUCg---------CCGUCGCCGuCGUug -5'
269 5' -62.7 AC_000008.1 + 17259 0.68 0.179799
Target:  5'- gCGGUGGCGgaugccGCGGUgcaGGCGGUcgcuGCGGCc -3'
miRNA:   3'- gGCCGCCGU------CGCCG---UCGCCGu---CGUUG- -5'
269 5' -62.7 AC_000008.1 + 2131 0.68 0.178359
Target:  5'- cCCGGCGauaauaccgacggaGgAGCaGCAGCaGCAGCAGg -3'
miRNA:   3'- -GGCCGC--------------CgUCGcCGUCGcCGUCGUUg -5'
269 5' -62.7 AC_000008.1 + 17272 0.68 0.17039
Target:  5'- gCUGGCGGC-GCGGCGcagggacgcGCGGCuAG-GACg -3'
miRNA:   3'- -GGCCGCCGuCGCCGU---------CGCCG-UCgUUG- -5'
269 5' -62.7 AC_000008.1 + 12678 0.68 0.165853
Target:  5'- gUGGC-GCAGCGugaGC-GCGcGCAGCAGCa -3'
miRNA:   3'- gGCCGcCGUCGC---CGuCGC-CGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 16321 0.68 0.165853
Target:  5'- uCCaGGCGaCgAGCGGCcGCcGCAGCAGCc -3'
miRNA:   3'- -GG-CCGCcG-UCGCCGuCGcCGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 25077 0.68 0.165853
Target:  5'- gCGcGCGGcCAGUGGCcaaaaaagcuAGCG-CAGCAGCc -3'
miRNA:   3'- gGC-CGCC-GUCGCCG----------UCGCcGUCGUUG- -5'
269 5' -62.7 AC_000008.1 + 19810 0.68 0.161424
Target:  5'- aCUGGUGGCGGCGugGGCGuGUAGUuGCg -3'
miRNA:   3'- -GGCCGCCGUCGCcgUCGC-CGUCGuUG- -5'
269 5' -62.7 AC_000008.1 + 19187 0.68 0.161424
Target:  5'- cCCGucGCcugGGC-GCGGUAGCGuGCAGCAGu -3'
miRNA:   3'- -GGC--CG---CCGuCGCCGUCGC-CGUCGUUg -5'
269 5' -62.7 AC_000008.1 + 16501 0.69 0.152886
Target:  5'- ------cCAGCGGCGGCGGCGcGCAACg -3'
miRNA:   3'- ggccgccGUCGCCGUCGCCGU-CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.