Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26903 | 5' | -58.4 | NC_005809.1 | + | 9660 | 0.66 | 0.46132 |
Target: 5'- -aGCCAGCcGUgcaGGCCGUgGCCGcAGUUc -3' miRNA: 3'- agCGGUCGcCA---CCGGCA-CGGCaUUAA- -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 37712 | 0.66 | 0.451308 |
Target: 5'- cUCGCCGGCGaGgauuggaagcUGGCCGcuuuCCGUGAa- -3' miRNA: 3'- -AGCGGUCGC-C----------ACCGGCac--GGCAUUaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 10031 | 0.66 | 0.441416 |
Target: 5'- aUCGCCGGCGGcagcauccUGGCCG-GCa------ -3' miRNA: 3'- -AGCGGUCGCC--------ACCGGCaCGgcauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 604 | 0.66 | 0.412499 |
Target: 5'- cCGCCuGCGGgucGGCCagcagcGCCGUGGa- -3' miRNA: 3'- aGCGGuCGCCa--CCGGca----CGGCAUUaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 16321 | 0.67 | 0.403123 |
Target: 5'- -gGCCGGCgGGUGcCCGUGCCu----- -3' miRNA: 3'- agCGGUCG-CCACcGGCACGGcauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 19489 | 0.67 | 0.403123 |
Target: 5'- gUGCCGGUGGgcaGGCCGcUGCgaacCGUGGUc -3' miRNA: 3'- aGCGGUCGCCa--CCGGC-ACG----GCAUUAa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 4800 | 0.67 | 0.37316 |
Target: 5'- aCGCCGGCuGGcgcugcgggauugcUGGCCGgcgacaggucGCCGUAGUc -3' miRNA: 3'- aGCGGUCG-CC--------------ACCGGCa---------CGGCAUUAa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 41258 | 0.67 | 0.367002 |
Target: 5'- cUUGUCGGCcuGGUGGCCGUcGCCcUGGg- -3' miRNA: 3'- -AGCGGUCG--CCACCGGCA-CGGcAUUaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 35974 | 0.67 | 0.358326 |
Target: 5'- aCGCCAugcucuacGUGGUgccGGCCGUGCUGg---- -3' miRNA: 3'- aGCGGU--------CGCCA---CCGGCACGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 19345 | 0.68 | 0.349795 |
Target: 5'- -gGCgCGGuCGGUGGCCGagGCCGa---- -3' miRNA: 3'- agCG-GUC-GCCACCGGCa-CGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 29311 | 0.68 | 0.349795 |
Target: 5'- cUUGCCcagcacuucaaGGCGGUGGCgGUcGCCGg---- -3' miRNA: 3'- -AGCGG-----------UCGCCACCGgCA-CGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 11173 | 0.68 | 0.34141 |
Target: 5'- gUUGCguGCGcUGGUCG-GCCGUGGUg -3' miRNA: 3'- -AGCGguCGCcACCGGCaCGGCAUUAa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 29136 | 0.68 | 0.34141 |
Target: 5'- cCGCCAaGCuGGcgGGCC-UGCCGUGGg- -3' miRNA: 3'- aGCGGU-CG-CCa-CCGGcACGGCAUUaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 3598 | 0.68 | 0.325078 |
Target: 5'- cCGCCAGUGuUGGCCGUGUauucgGAUg -3' miRNA: 3'- aGCGGUCGCcACCGGCACGgca--UUAa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 8509 | 0.68 | 0.325078 |
Target: 5'- aUGCagauGCGGgugGGCCGUGgCGUAGg- -3' miRNA: 3'- aGCGgu--CGCCa--CCGGCACgGCAUUaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 21894 | 0.68 | 0.321882 |
Target: 5'- gUCGCCcaaggcuuccauuGCGG-GGCUGuUGCCGUAGa- -3' miRNA: 3'- -AGCGGu------------CGCCaCCGGC-ACGGCAUUaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 18469 | 0.69 | 0.309335 |
Target: 5'- gCGCCGGCGGcgucGGCCGauucguccaCCGUGAUg -3' miRNA: 3'- aGCGGUCGCCa---CCGGCac-------GGCAUUAa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 5809 | 0.69 | 0.294179 |
Target: 5'- gCGCCAGCGGauagucgGGCauggCGUGCCGc---- -3' miRNA: 3'- aGCGGUCGCCa------CCG----GCACGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 3739 | 0.69 | 0.286821 |
Target: 5'- aCGCCGGUGGUGGgCacgucgGUGCCGc---- -3' miRNA: 3'- aGCGGUCGCCACCgG------CACGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 5897 | 0.7 | 0.239344 |
Target: 5'- gUCGCCAGC-GUGGUgagUGUGCCGccggGAUUg -3' miRNA: 3'- -AGCGGUCGcCACCG---GCACGGCa---UUAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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