miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26939 3' -59.1 NC_005809.1 + 17090 0.66 0.497658
Target:  5'- gCCGGCGCGGuucucgGCCGGGccuuggggcuugaccACGaagUUGCGg -3'
miRNA:   3'- -GGCCGCGCU------UGGUCC---------------UGCggaAGCGC- -5'
26939 3' -59.1 NC_005809.1 + 34789 0.66 0.493613
Target:  5'- -gGGCgGCGAAggguGGACGCCggCGCa -3'
miRNA:   3'- ggCCG-CGCUUggu-CCUGCGGaaGCGc -5'
26939 3' -59.1 NC_005809.1 + 3498 0.66 0.493613
Target:  5'- cCCGGCGUu--CCAGuACGCag-CGCGa -3'
miRNA:   3'- -GGCCGCGcuuGGUCcUGCGgaaGCGC- -5'
26939 3' -59.1 NC_005809.1 + 14413 0.66 0.483569
Target:  5'- gCUGG-GCGucGCCAGGcGCGCCU--GCGg -3'
miRNA:   3'- -GGCCgCGCu-UGGUCC-UGCGGAagCGC- -5'
26939 3' -59.1 NC_005809.1 + 38550 0.66 0.483569
Target:  5'- aCCcGCGCGGcaugACgCuGGugGCCggCGCGu -3'
miRNA:   3'- -GGcCGCGCU----UG-GuCCugCGGaaGCGC- -5'
26939 3' -59.1 NC_005809.1 + 29382 0.66 0.483569
Target:  5'- -aGGCGUacaacgccGGCCaAGGGCGCCcagCGCGg -3'
miRNA:   3'- ggCCGCGc-------UUGG-UCCUGCGGaa-GCGC- -5'
26939 3' -59.1 NC_005809.1 + 23761 0.66 0.473624
Target:  5'- gCCGGCGCc-ACCGGGccgauGCGCCgcgGCu -3'
miRNA:   3'- -GGCCGCGcuUGGUCC-----UGCGGaagCGc -5'
26939 3' -59.1 NC_005809.1 + 33934 0.66 0.473624
Target:  5'- aCGGCGCGGcCUGGGGCGUUUcCGa- -3'
miRNA:   3'- gGCCGCGCUuGGUCCUGCGGAaGCgc -5'
26939 3' -59.1 NC_005809.1 + 9484 0.66 0.473624
Target:  5'- -gGGCGagGAugUAGGcCGCCgcgUCGCu -3'
miRNA:   3'- ggCCGCg-CUugGUCCuGCGGa--AGCGc -5'
26939 3' -59.1 NC_005809.1 + 7831 0.66 0.473624
Target:  5'- -aGGCGCGGcugcacgaugACCAGG-CGCacgCGCu -3'
miRNA:   3'- ggCCGCGCU----------UGGUCCuGCGgaaGCGc -5'
26939 3' -59.1 NC_005809.1 + 27952 0.66 0.463782
Target:  5'- aCCGGCGCcgGAAgCAuGGAaGCCgaCGCa -3'
miRNA:   3'- -GGCCGCG--CUUgGU-CCUgCGGaaGCGc -5'
26939 3' -59.1 NC_005809.1 + 7247 0.66 0.463782
Target:  5'- aCUGGCGCGGGCCGauguCGCCggccUUGUGc -3'
miRNA:   3'- -GGCCGCGCUUGGUccu-GCGGa---AGCGC- -5'
26939 3' -59.1 NC_005809.1 + 5636 0.66 0.463782
Target:  5'- gCGGCGC-AGCUugcuGGugGCUggaCGCGg -3'
miRNA:   3'- gGCCGCGcUUGGu---CCugCGGaa-GCGC- -5'
26939 3' -59.1 NC_005809.1 + 34104 0.66 0.463782
Target:  5'- gUCGGCuGCGGcaucgcaggccACCucGACGCCgacaUCGCGc -3'
miRNA:   3'- -GGCCG-CGCU-----------UGGucCUGCGGa---AGCGC- -5'
26939 3' -59.1 NC_005809.1 + 42398 0.66 0.463782
Target:  5'- aCGGUgcccaGCGAcACCGGGGCGCaucCGCc -3'
miRNA:   3'- gGCCG-----CGCU-UGGUCCUGCGgaaGCGc -5'
26939 3' -59.1 NC_005809.1 + 11333 0.66 0.461827
Target:  5'- cCCGGCucguagcugggccGCGcGCCGGGGuucuucaUGCUUUCGCc -3'
miRNA:   3'- -GGCCG-------------CGCuUGGUCCU-------GCGGAAGCGc -5'
26939 3' -59.1 NC_005809.1 + 16238 0.66 0.454049
Target:  5'- gCGGCGCG-GCCAGuuCGCggugCGCGu -3'
miRNA:   3'- gGCCGCGCuUGGUCcuGCGgaa-GCGC- -5'
26939 3' -59.1 NC_005809.1 + 24473 0.66 0.454049
Target:  5'- aCGGCGCGAAggcguCCuGGuucGCGCCggcUUCgGCGg -3'
miRNA:   3'- gGCCGCGCUU-----GGuCC---UGCGG---AAG-CGC- -5'
26939 3' -59.1 NC_005809.1 + 34463 0.66 0.453082
Target:  5'- gCCGGCcgcGCGGugCAGGgccucaaACGCUUUUGgGc -3'
miRNA:   3'- -GGCCG---CGCUugGUCC-------UGCGGAAGCgC- -5'
26939 3' -59.1 NC_005809.1 + 14319 0.67 0.445385
Target:  5'- aCUGGCGCGcgccuuggcugaacuGCCGGGcCuGCUggUUCGCGg -3'
miRNA:   3'- -GGCCGCGCu--------------UGGUCCuG-CGG--AAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.