miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2695 5' -54.2 NC_001491.2 + 13930 0.66 0.95174
Target:  5'- aGCGC--GCCggggCUGGCGgccuugGGCGgUGGCa -3'
miRNA:   3'- -CGCGauCGG----GAUCGCaa----UCGCgAUCG- -5'
2695 5' -54.2 NC_001491.2 + 91691 0.66 0.95174
Target:  5'- uCGCUAGCac-GGCGUcccuGaCGCUGGCc -3'
miRNA:   3'- cGCGAUCGggaUCGCAau--C-GCGAUCG- -5'
2695 5' -54.2 NC_001491.2 + 84697 0.66 0.95174
Target:  5'- uGgGCUAGCUCUauGGCGgu--CGCUaAGCu -3'
miRNA:   3'- -CgCGAUCGGGA--UCGCaaucGCGA-UCG- -5'
2695 5' -54.2 NC_001491.2 + 43309 0.66 0.95174
Target:  5'- aGUGCUGGUCCcGGUagUGGUGUaUAGCu -3'
miRNA:   3'- -CGCGAUCGGGaUCGcaAUCGCG-AUCG- -5'
2695 5' -54.2 NC_001491.2 + 148278 0.66 0.95174
Target:  5'- gGCGCUcccggGGCC--AGCGcacGGCGCaGGCg -3'
miRNA:   3'- -CGCGA-----UCGGgaUCGCaa-UCGCGaUCG- -5'
2695 5' -54.2 NC_001491.2 + 138480 0.66 0.95174
Target:  5'- gGCGUcGGCCCUuaUGUaaUAGCGCUcGUc -3'
miRNA:   3'- -CGCGaUCGGGAucGCA--AUCGCGAuCG- -5'
2695 5' -54.2 NC_001491.2 + 16644 0.66 0.947463
Target:  5'- cGUGUccaugUAGCgCCUGuGUGUUGGaccaaGCUAGCc -3'
miRNA:   3'- -CGCG-----AUCG-GGAU-CGCAAUCg----CGAUCG- -5'
2695 5' -54.2 NC_001491.2 + 50205 0.66 0.947463
Target:  5'- aGCGCgAGCC--AGUGUUcgcGCGUUAGUa -3'
miRNA:   3'- -CGCGaUCGGgaUCGCAAu--CGCGAUCG- -5'
2695 5' -54.2 NC_001491.2 + 88173 0.66 0.942942
Target:  5'- gGUGC---CCCUgauAGCucUGGCGCUAGCg -3'
miRNA:   3'- -CGCGaucGGGA---UCGcaAUCGCGAUCG- -5'
2695 5' -54.2 NC_001491.2 + 35970 0.67 0.922388
Target:  5'- gGCcCUGGCCagcuGCGUgUGGCGUgugAGCa -3'
miRNA:   3'- -CGcGAUCGGgau-CGCA-AUCGCGa--UCG- -5'
2695 5' -54.2 NC_001491.2 + 70886 0.67 0.916627
Target:  5'- uGCGC-AGCUUUAGCaucAGCGCgucaAGCg -3'
miRNA:   3'- -CGCGaUCGGGAUCGcaaUCGCGa---UCG- -5'
2695 5' -54.2 NC_001491.2 + 24058 0.67 0.916627
Target:  5'- gGCGCUGGCCacuCUAGUGgcagccAGUGuCUGGg -3'
miRNA:   3'- -CGCGAUCGG---GAUCGCaa----UCGC-GAUCg -5'
2695 5' -54.2 NC_001491.2 + 85046 0.67 0.916037
Target:  5'- cGCGCUuggaaucGGCCCcgUAGCG--AGUGCcugggGGCa -3'
miRNA:   3'- -CGCGA-------UCGGG--AUCGCaaUCGCGa----UCG- -5'
2695 5' -54.2 NC_001491.2 + 146889 0.67 0.904361
Target:  5'- cGgGCccgGGCCCccucGGCGUugUAGCGCaccAGCg -3'
miRNA:   3'- -CgCGa--UCGGGa---UCGCA--AUCGCGa--UCG- -5'
2695 5' -54.2 NC_001491.2 + 13978 0.67 0.904361
Target:  5'- aGCGuCUGGCCCUccggaaaacccAGCucgccuugUAGCcGCUGGUa -3'
miRNA:   3'- -CGC-GAUCGGGA-----------UCGca------AUCG-CGAUCG- -5'
2695 5' -54.2 NC_001491.2 + 65769 0.68 0.89112
Target:  5'- aGCGCUcaccgcGCCCaGGCG--AGCGCagAGCc -3'
miRNA:   3'- -CGCGAu-----CGGGaUCGCaaUCGCGa-UCG- -5'
2695 5' -54.2 NC_001491.2 + 110781 0.68 0.87693
Target:  5'- cCGCgGGCCCcAGuCGccugGGUGCUGGCc -3'
miRNA:   3'- cGCGaUCGGGaUC-GCaa--UCGCGAUCG- -5'
2695 5' -54.2 NC_001491.2 + 1549 0.68 0.869491
Target:  5'- gGCGCacAGCCC-AGCGau-GCGC-GGCg -3'
miRNA:   3'- -CGCGa-UCGGGaUCGCaauCGCGaUCG- -5'
2695 5' -54.2 NC_001491.2 + 148148 0.69 0.853952
Target:  5'- -aGCUuGCgCCUGGCGgagcccaGGCGCaGGCa -3'
miRNA:   3'- cgCGAuCG-GGAUCGCaa-----UCGCGaUCG- -5'
2695 5' -54.2 NC_001491.2 + 106202 0.69 0.837576
Target:  5'- aCGCUcggGGCCCUGGCcaUGGCaGCacAGCg -3'
miRNA:   3'- cGCGA---UCGGGAUCGcaAUCG-CGa-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.