miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26981 5' -60.1 NC_005809.1 + 39634 0.66 0.422485
Target:  5'- aCGUGCCGCGCGacgcggugugggcCGGcaugggaaugggcaaGACGguUUCCGCg -3'
miRNA:   3'- -GCGCGGUGCGC-------------GCU---------------UUGCguGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 24739 0.66 0.410532
Target:  5'- cCGCGCC-UGCGCGGccuCG-ACCCaUGCu -3'
miRNA:   3'- -GCGCGGuGCGCGCUuu-GCgUGGG-GCG- -5'
26981 5' -60.1 NC_005809.1 + 4517 0.66 0.401483
Target:  5'- gGCGCCcgugaacgugGCGUGCuGGGcgguCGUGCCgCCGCg -3'
miRNA:   3'- gCGCGG----------UGCGCG-CUUu---GCGUGG-GGCG- -5'
26981 5' -60.1 NC_005809.1 + 3688 0.66 0.401483
Target:  5'- uGCGaauccaCCACG-GCGAcGCGCugCCCcauGCg -3'
miRNA:   3'- gCGC------GGUGCgCGCUuUGCGugGGG---CG- -5'
26981 5' -60.1 NC_005809.1 + 28356 0.66 0.438425
Target:  5'- uCGgGCaGCGCGCGGAugGUuuCCUugGCg -3'
miRNA:   3'- -GCgCGgUGCGCGCUUugCGugGGG--CG- -5'
26981 5' -60.1 NC_005809.1 + 23903 0.66 0.411444
Target:  5'- uGCGCCACGCccGCGGcuuccaugccggcauAggcgugauggucagGCGcCGCCCgGCg -3'
miRNA:   3'- gCGCGGUGCG--CGCU---------------U--------------UGC-GUGGGgCG- -5'
26981 5' -60.1 NC_005809.1 + 24148 0.66 0.390792
Target:  5'- gCGCGCCugGCccaGCGccucgacggcuGCGCGCUUCGg -3'
miRNA:   3'- -GCGCGGugCG---CGCuu---------UGCGUGGGGCg -5'
26981 5' -60.1 NC_005809.1 + 2226 0.66 0.429006
Target:  5'- aGCaCCACGCGCagcaggcGGCGCgugGCCgCGCa -3'
miRNA:   3'- gCGcGGUGCGCGcu-----UUGCG---UGGgGCG- -5'
26981 5' -60.1 NC_005809.1 + 2650 0.66 0.419708
Target:  5'- gGCGCUugcCGUGCGAGgucuugcgguACGCAUCgaGCa -3'
miRNA:   3'- gCGCGGu--GCGCGCUU----------UGCGUGGggCG- -5'
26981 5' -60.1 NC_005809.1 + 12611 0.66 0.429006
Target:  5'- uGCGCaugGCGCc-GACGCGCUCgGCa -3'
miRNA:   3'- gCGCGgugCGCGcuUUGCGUGGGgCG- -5'
26981 5' -60.1 NC_005809.1 + 25241 0.66 0.419708
Target:  5'- aGC-CCAUGa-CGAAGCGCACCUguUGCu -3'
miRNA:   3'- gCGcGGUGCgcGCUUUGCGUGGG--GCG- -5'
26981 5' -60.1 NC_005809.1 + 36818 0.66 0.392561
Target:  5'- gGC-CCugGCGCacu-CGCugCCCGg -3'
miRNA:   3'- gCGcGGugCGCGcuuuGCGugGGGCg -5'
26981 5' -60.1 NC_005809.1 + 28691 0.66 0.419708
Target:  5'- gCGCGCCACGuCGUucacaaGGucGAUGCugUCgGCg -3'
miRNA:   3'- -GCGCGGUGC-GCG------CU--UUGCGugGGgCG- -5'
26981 5' -60.1 NC_005809.1 + 29617 0.66 0.401483
Target:  5'- gGUGuCCAuuCGCGCGAA---CAUCCCGCc -3'
miRNA:   3'- gCGC-GGU--GCGCGCUUugcGUGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 3038 0.66 0.432759
Target:  5'- uGCGauuCACGCGgGcaauccaggagccgaGAAUGCGCCCCa- -3'
miRNA:   3'- gCGCg--GUGCGCgC---------------UUUGCGUGGGGcg -5'
26981 5' -60.1 NC_005809.1 + 27719 0.66 0.401483
Target:  5'- gGCGCCcaGCGUGCG--GCGCuggCCGCc -3'
miRNA:   3'- gCGCGG--UGCGCGCuuUGCGuggGGCG- -5'
26981 5' -60.1 NC_005809.1 + 18082 0.66 0.401483
Target:  5'- uGgGCCGCcgaagccgGCGCGAaccagGACGC-CUUCGCg -3'
miRNA:   3'- gCgCGGUG--------CGCGCU-----UUGCGuGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 33250 0.66 0.401483
Target:  5'- cCGCccGCCGCGC-CGAcgUGCGCCgCCa- -3'
miRNA:   3'- -GCG--CGGUGCGcGCUuuGCGUGG-GGcg -5'
26981 5' -60.1 NC_005809.1 + 40338 0.66 0.392561
Target:  5'- gCGCgGCCACGCGCcgccUGCugCgCGUg -3'
miRNA:   3'- -GCG-CGGUGCGCGcuuuGCGugGgGCG- -5'
26981 5' -60.1 NC_005809.1 + 5423 0.66 0.438425
Target:  5'- aCGCuCCACgGCGCGGAugGCGgCgUGg -3'
miRNA:   3'- -GCGcGGUG-CGCGCUUugCGUgGgGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.