miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26981 5' -60.1 NC_005809.1 + 36958 1.1 0.000227
Target:  5'- cCGCGCCACGCGCGAAACGCACCCCGCc -3'
miRNA:   3'- -GCGCGGUGCGCGCUUUGCGUGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 27420 0.81 0.035208
Target:  5'- gCGCGCCugGCGCac--CGCGCCCgGCg -3'
miRNA:   3'- -GCGCGGugCGCGcuuuGCGUGGGgCG- -5'
26981 5' -60.1 NC_005809.1 + 24070 0.81 0.036234
Target:  5'- cCGCGCaCAguagcggcgacCGCGCGggGCacggGCACCCCGCu -3'
miRNA:   3'- -GCGCG-GU-----------GCGCGCuuUG----CGUGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 12139 0.8 0.044282
Target:  5'- aCGCGCCACGCGCu--GCGC-UUCCGCg -3'
miRNA:   3'- -GCGCGGUGCGCGcuuUGCGuGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 19962 0.8 0.046886
Target:  5'- uGCuGCCGCGCGCGggGCGCuuCUUCGUg -3'
miRNA:   3'- gCG-CGGUGCGCGCuuUGCGu-GGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 33568 0.8 0.048243
Target:  5'- uGCGCCGCcUGCugGAAGCGC-CCCCGCg -3'
miRNA:   3'- gCGCGGUGcGCG--CUUUGCGuGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 10644 0.79 0.054067
Target:  5'- gGCGUCAUucaccugcgGCGUGAAACGCGCCgCCGUg -3'
miRNA:   3'- gCGCGGUG---------CGCGCUUUGCGUGG-GGCG- -5'
26981 5' -60.1 NC_005809.1 + 13807 0.79 0.055626
Target:  5'- gCGaCGCCguGCGCGCcgaGAAGCGCACCgCGCu -3'
miRNA:   3'- -GC-GCGG--UGCGCG---CUUUGCGUGGgGCG- -5'
26981 5' -60.1 NC_005809.1 + 24494 0.77 0.073813
Target:  5'- uCGCGCCGgcuuCG-GCGGcccagcACGCACCCCGCg -3'
miRNA:   3'- -GCGCGGU----GCgCGCUu-----UGCGUGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 18472 0.77 0.075918
Target:  5'- aCGCGCgCAUGUaGCGGggUGCccguGCCCCGCg -3'
miRNA:   3'- -GCGCG-GUGCG-CGCUuuGCG----UGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 12993 0.76 0.084693
Target:  5'- gCGCGCCugGgCGCGGccgaccuGACGCgauACCCCGa -3'
miRNA:   3'- -GCGCGGugC-GCGCU-------UUGCG---UGGGGCg -5'
26981 5' -60.1 NC_005809.1 + 27797 0.76 0.087094
Target:  5'- gCGCGCCGCGCaGcCGcAGcacguccucgcgcGCGCugCCCGCg -3'
miRNA:   3'- -GCGCGGUGCG-C-GC-UU-------------UGCGugGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 6460 0.76 0.087338
Target:  5'- gCGuCGCCGuCGCGCaGGAACuGCACgCCGCg -3'
miRNA:   3'- -GC-GCGGU-GCGCG-CUUUG-CGUGgGGCG- -5'
26981 5' -60.1 NC_005809.1 + 171 0.76 0.094955
Target:  5'- aGCuGCCGCGCGCaGAAUGCcggcgucauCCCCGCc -3'
miRNA:   3'- gCG-CGGUGCGCGcUUUGCGu--------GGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 9653 0.75 0.103199
Target:  5'- aGCaGCCACGCGCGGAAcCGCuggaaaagGCCgUGCa -3'
miRNA:   3'- gCG-CGGUGCGCGCUUU-GCG--------UGGgGCG- -5'
26981 5' -60.1 NC_005809.1 + 34411 0.75 0.109064
Target:  5'- cCGgGCgCACGCGCaGGGACGCAgcgccgacaCCCGCa -3'
miRNA:   3'- -GCgCG-GUGCGCG-CUUUGCGUg--------GGGCG- -5'
26981 5' -60.1 NC_005809.1 + 27892 0.74 0.115241
Target:  5'- gCGUGCucgcccagCACGuCGCGGAugGCACCCaGCa -3'
miRNA:   3'- -GCGCG--------GUGC-GCGCUUugCGUGGGgCG- -5'
26981 5' -60.1 NC_005809.1 + 20541 0.74 0.115241
Target:  5'- aGCGCCACaCGaUGcgGCGC-CCCCGCu -3'
miRNA:   3'- gCGCGGUGcGC-GCuuUGCGuGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 24439 0.74 0.121411
Target:  5'- gGUGCCGCGCGCGGccucggcgacauuGACGCcgacgaCCUGCu -3'
miRNA:   3'- gCGCGGUGCGCGCU-------------UUGCGug----GGGCG- -5'
26981 5' -60.1 NC_005809.1 + 13146 0.74 0.121744
Target:  5'- gGCGCgACGUGCGAgcgcgugggcAACGCGCCCa-- -3'
miRNA:   3'- gCGCGgUGCGCGCU----------UUGCGUGGGgcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.