miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26981 5' -60.1 NC_005809.1 + 9732 0.72 0.159213
Target:  5'- --aGCCGCGgGCGAAcugcucgugguggGCGCGCUUCGCc -3'
miRNA:   3'- gcgCGGUGCgCGCUU-------------UGCGUGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 39743 0.74 0.128585
Target:  5'- gGCGCCGCuGCGCGugGCcgcgaGCACCUgGCc -3'
miRNA:   3'- gCGCGGUG-CGCGCuuUG-----CGUGGGgCG- -5'
26981 5' -60.1 NC_005809.1 + 10008 0.74 0.132138
Target:  5'- aGUGCCGCGCGCccg--GC-CCCCGCc -3'
miRNA:   3'- gCGCGGUGCGCGcuuugCGuGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 35945 0.74 0.132138
Target:  5'- aCGUGUC-CGCGCGcAGCGCcacGCgCCCGCu -3'
miRNA:   3'- -GCGCGGuGCGCGCuUUGCG---UG-GGGCG- -5'
26981 5' -60.1 NC_005809.1 + 36241 0.74 0.132138
Target:  5'- gGCGCuuuggCugGgGCGGAACGCGCCgCGUc -3'
miRNA:   3'- gCGCG-----GugCgCGCUUUGCGUGGgGCG- -5'
26981 5' -60.1 NC_005809.1 + 149 0.74 0.132138
Target:  5'- gGCGCCAgGCuuccccgcagGCG-GAUGCGCCCCGg -3'
miRNA:   3'- gCGCGGUgCG----------CGCuUUGCGUGGGGCg -5'
26981 5' -60.1 NC_005809.1 + 18405 0.73 0.151293
Target:  5'- gGCgGCCACGUcgGCGAAggugGCGUugUCCGCc -3'
miRNA:   3'- gCG-CGGUGCG--CGCUU----UGCGugGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 36190 0.73 0.154999
Target:  5'- gGCGCCGCG-GCGGccGACcugguguaacccaGCGCCCCGg -3'
miRNA:   3'- gCGCGGUGCgCGCU--UUG-------------CGUGGGGCg -5'
26981 5' -60.1 NC_005809.1 + 11842 0.73 0.155416
Target:  5'- cCGCGCCGCGguugGCcuGGGCGaACCCCGCg -3'
miRNA:   3'- -GCGCGGUGCg---CGc-UUUGCgUGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 9214 0.74 0.128585
Target:  5'- gGCGCgGCGCaCGuucugcGGCGCGCCCgGCg -3'
miRNA:   3'- gCGCGgUGCGcGCu-----UUGCGUGGGgCG- -5'
26981 5' -60.1 NC_005809.1 + 10544 0.74 0.12478
Target:  5'- cCGcCGCCACGCGCaacggguauugcuGGAACaGCGCCUCGg -3'
miRNA:   3'- -GC-GCGGUGCGCG-------------CUUUG-CGUGGGGCg -5'
26981 5' -60.1 NC_005809.1 + 24439 0.74 0.121411
Target:  5'- gGUGCCGCGCGCGGccucggcgacauuGACGCcgacgaCCUGCu -3'
miRNA:   3'- gCGCGGUGCGCGCU-------------UUGCGug----GGGCG- -5'
26981 5' -60.1 NC_005809.1 + 27420 0.81 0.035208
Target:  5'- gCGCGCCugGCGCac--CGCGCCCgGCg -3'
miRNA:   3'- -GCGCGGugCGCGcuuuGCGUGGGgCG- -5'
26981 5' -60.1 NC_005809.1 + 24070 0.81 0.036234
Target:  5'- cCGCGCaCAguagcggcgacCGCGCGggGCacggGCACCCCGCu -3'
miRNA:   3'- -GCGCG-GU-----------GCGCGCuuUG----CGUGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 12139 0.8 0.044282
Target:  5'- aCGCGCCACGCGCu--GCGC-UUCCGCg -3'
miRNA:   3'- -GCGCGGUGCGCGcuuUGCGuGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 10644 0.79 0.054067
Target:  5'- gGCGUCAUucaccugcgGCGUGAAACGCGCCgCCGUg -3'
miRNA:   3'- gCGCGGUG---------CGCGCUUUGCGUGG-GGCG- -5'
26981 5' -60.1 NC_005809.1 + 27797 0.76 0.087094
Target:  5'- gCGCGCCGCGCaGcCGcAGcacguccucgcgcGCGCugCCCGCg -3'
miRNA:   3'- -GCGCGGUGCG-C-GC-UU-------------UGCGugGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 9653 0.75 0.103199
Target:  5'- aGCaGCCACGCGCGGAAcCGCuggaaaagGCCgUGCa -3'
miRNA:   3'- gCG-CGGUGCGCGCUUU-GCG--------UGGgGCG- -5'
26981 5' -60.1 NC_005809.1 + 20541 0.74 0.115241
Target:  5'- aGCGCCACaCGaUGcgGCGC-CCCCGCu -3'
miRNA:   3'- gCGCGGUGcGC-GCuuUGCGuGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 27892 0.74 0.115241
Target:  5'- gCGUGCucgcccagCACGuCGCGGAugGCACCCaGCa -3'
miRNA:   3'- -GCGCG--------GUGC-GCGCUUugCGUGGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.