miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26981 5' -60.1 NC_005809.1 + 149 0.74 0.132138
Target:  5'- gGCGCCAgGCuuccccgcagGCG-GAUGCGCCCCGg -3'
miRNA:   3'- gCGCGGUgCG----------CGCuUUGCGUGGGGCg -5'
26981 5' -60.1 NC_005809.1 + 171 0.76 0.094955
Target:  5'- aGCuGCCGCGCGCaGAAUGCcggcgucauCCCCGCc -3'
miRNA:   3'- gCG-CGGUGCGCGcUUUGCGu--------GGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 210 0.71 0.192202
Target:  5'- gGCGaCACG-GCGAAcugGCGCACCUCGg -3'
miRNA:   3'- gCGCgGUGCgCGCUU---UGCGUGGGGCg -5'
26981 5' -60.1 NC_005809.1 + 394 0.71 0.187216
Target:  5'- gCGCgGCCAgCGCGCGAcuguugAGCaGCACgUCGCg -3'
miRNA:   3'- -GCG-CGGU-GCGCGCU------UUG-CGUGgGGCG- -5'
26981 5' -60.1 NC_005809.1 + 966 0.66 0.405087
Target:  5'- uCGaGCCACGUGuCGAgccAGCccuucaccgucgcccGCugCCCGCg -3'
miRNA:   3'- -GCgCGGUGCGC-GCU---UUG---------------CGugGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 1358 0.68 0.318273
Target:  5'- gGCgGCCuuGCGCauccggcgaccGAAGCGCAaguCCUCGCg -3'
miRNA:   3'- gCG-CGGugCGCG-----------CUUUGCGU---GGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 1385 0.67 0.372537
Target:  5'- cCGCgGCCACGCGCacAACGguuucacucauggcCGCCCCc- -3'
miRNA:   3'- -GCG-CGGUGCGCGcuUUGC--------------GUGGGGcg -5'
26981 5' -60.1 NC_005809.1 + 1660 0.71 0.187216
Target:  5'- gCGCGuCCuguuUGCGCGuGAUGCugCCgCGCa -3'
miRNA:   3'- -GCGC-GGu---GCGCGCuUUGCGugGG-GCG- -5'
26981 5' -60.1 NC_005809.1 + 1771 0.69 0.261543
Target:  5'- uGCGCCugGCGCGu--CGgGCCgauaCGUu -3'
miRNA:   3'- gCGCGGugCGCGCuuuGCgUGGg---GCG- -5'
26981 5' -60.1 NC_005809.1 + 2226 0.66 0.429006
Target:  5'- aGCaCCACGCGCagcaggcGGCGCgugGCCgCGCa -3'
miRNA:   3'- gCGcGGUGCGCGcu-----UUGCG---UGGgGCG- -5'
26981 5' -60.1 NC_005809.1 + 2343 0.68 0.295974
Target:  5'- uGCGUgGCGCGCGu-GCGCcgcaauucGgCCUGCa -3'
miRNA:   3'- gCGCGgUGCGCGCuuUGCG--------UgGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 2580 0.7 0.24871
Target:  5'- aGCGCgUGCGCGCGcuuGC-CGCCCUGUu -3'
miRNA:   3'- gCGCG-GUGCGCGCuu-UGcGUGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 2650 0.66 0.419708
Target:  5'- gGCGCUugcCGUGCGAGgucuugcgguACGCAUCgaGCa -3'
miRNA:   3'- gCGCGGu--GCGCGCUU----------UGCGUGGggCG- -5'
26981 5' -60.1 NC_005809.1 + 2833 0.68 0.303269
Target:  5'- uCGCgGCCACGCGC--AGCGgCGCCa-GCa -3'
miRNA:   3'- -GCG-CGGUGCGCGcuUUGC-GUGGggCG- -5'
26981 5' -60.1 NC_005809.1 + 3038 0.66 0.432759
Target:  5'- uGCGauuCACGCGgGcaauccaggagccgaGAAUGCGCCCCa- -3'
miRNA:   3'- gCGCg--GUGCGCgC---------------UUUGCGUGGGGcg -5'
26981 5' -60.1 NC_005809.1 + 3458 0.67 0.366582
Target:  5'- aGaCGCCGCGCGCcccGAuguucGCGCuggaguucgacgGCCCgGCg -3'
miRNA:   3'- gC-GCGGUGCGCG---CUu----UGCG------------UGGGgCG- -5'
26981 5' -60.1 NC_005809.1 + 3565 0.68 0.32134
Target:  5'- cCGCGCCgcauaaauuucagcgACGCGcCGGGucACGUACCuaaccuugaCCGCg -3'
miRNA:   3'- -GCGCGG---------------UGCGC-GCUU--UGCGUGG---------GGCG- -5'
26981 5' -60.1 NC_005809.1 + 3688 0.66 0.401483
Target:  5'- uGCGaauccaCCACG-GCGAcGCGCugCCCcauGCg -3'
miRNA:   3'- gCGC------GGUGCgCGCUuUGCGugGGG---CG- -5'
26981 5' -60.1 NC_005809.1 + 3707 0.71 0.213321
Target:  5'- uGUuCCACGCGCucGugGCGCCCgUGCc -3'
miRNA:   3'- gCGcGGUGCGCGcuUugCGUGGG-GCG- -5'
26981 5' -60.1 NC_005809.1 + 3836 0.71 0.187216
Target:  5'- uGCGaCCAauccaGCGCacuuuGCGCACCUCGCc -3'
miRNA:   3'- gCGC-GGUg----CGCGcuu--UGCGUGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.