miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26982 3' -52.5 NC_005809.1 + 42146 0.7 0.59262
Target:  5'- aGCACUaaGACCAacguGGCCcgCGACGugCu -3'
miRNA:   3'- -CGUGGagCUGGU----CUGGuaGUUGCugG- -5'
26982 3' -52.5 NC_005809.1 + 41970 0.69 0.660225
Target:  5'- cGCugCU-GGCC-GACCcgCAGgCGGCCa -3'
miRNA:   3'- -CGugGAgCUGGuCUGGuaGUU-GCUGG- -5'
26982 3' -52.5 NC_005809.1 + 41954 0.68 0.682657
Target:  5'- cGCGCCgaGGCUgAGGCCAUCAucgcCGACa -3'
miRNA:   3'- -CGUGGagCUGG-UCUGGUAGUu---GCUGg -5'
26982 3' -52.5 NC_005809.1 + 41254 0.71 0.537135
Target:  5'- cGCGCUugUCGGCCugguGGCCGUCGcccugggcGCGGCg -3'
miRNA:   3'- -CGUGG--AGCUGGu---CUGGUAGU--------UGCUGg -5'
26982 3' -52.5 NC_005809.1 + 40978 0.71 0.537135
Target:  5'- aCGCaCUCGACC--ACCAggaaggCGGCGGCCa -3'
miRNA:   3'- cGUG-GAGCUGGucUGGUa-----GUUGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 40815 0.69 0.6264
Target:  5'- cGCGCCa-GGCgCAGGCCggCcAUGACCg -3'
miRNA:   3'- -CGUGGagCUG-GUCUGGuaGuUGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 40628 0.79 0.196692
Target:  5'- cGCGCgCUCGACCAGAaCCcgCAgACGAUCc -3'
miRNA:   3'- -CGUG-GAGCUGGUCU-GGuaGU-UGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 40148 0.68 0.725727
Target:  5'- gGCGCCuucaaaUCGAggugguuCCAGuCCAUCcagguaggcAGCGACCg -3'
miRNA:   3'- -CGUGG------AGCU-------GGUCuGGUAG---------UUGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 39873 0.69 0.647835
Target:  5'- cGCaACCucaUCGACCAGAUCAccaccugggaaaaUCugcucgauGCGACCg -3'
miRNA:   3'- -CG-UGG---AGCUGGUCUGGU-------------AGu-------UGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 39765 0.67 0.748347
Target:  5'- aGCACCU-GGCCcGACgaAUCGACGAa- -3'
miRNA:   3'- -CGUGGAgCUGGuCUGg-UAGUUGCUgg -5'
26982 3' -52.5 NC_005809.1 + 39076 0.66 0.828546
Target:  5'- cGCGCUgCGuacuggaacGCCGGGCCGUCGAacuCCa -3'
miRNA:   3'- -CGUGGaGC---------UGGUCUGGUAGUUgcuGG- -5'
26982 3' -52.5 NC_005809.1 + 38409 0.69 0.637684
Target:  5'- aCACCUCGACCAcGGCgCgcaagGUgGGCGGCUu -3'
miRNA:   3'- cGUGGAGCUGGU-CUG-G-----UAgUUGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 38379 0.67 0.758933
Target:  5'- cGUGCUcgCGGCCAacaugcccGCCAUCGagGCGGCCg -3'
miRNA:   3'- -CGUGGa-GCUGGUc-------UGGUAGU--UGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 38292 0.67 0.766263
Target:  5'- uCACCgcCGACaCGG-CCAUCAccaugccggcgcugACGGCCg -3'
miRNA:   3'- cGUGGa-GCUG-GUCuGGUAGU--------------UGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 38222 0.67 0.788819
Target:  5'- cGCACCggcaacgcaaCGGCCAGcaucaaggcuggcACCAUCGugGAg- -3'
miRNA:   3'- -CGUGGa---------GCUGGUC-------------UGGUAGUugCUgg -5'
26982 3' -52.5 NC_005809.1 + 38015 0.68 0.715893
Target:  5'- aGCGCCUCGGCgAcuucGGCC-UCAAgcccaaGACCu -3'
miRNA:   3'- -CGUGGAGCUGgU----CUGGuAGUUg-----CUGG- -5'
26982 3' -52.5 NC_005809.1 + 37709 0.66 0.819164
Target:  5'- cGCGCUgggcaaCGACCuGACCgggcaaccuaugGUCAucgacuacgGCGACCu -3'
miRNA:   3'- -CGUGGa-----GCUGGuCUGG------------UAGU---------UGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 37632 0.66 0.809577
Target:  5'- -aACCUcgcagaCGugCAGACCGUC-GCGGgCa -3'
miRNA:   3'- cgUGGA------GCugGUCUGGUAGuUGCUgG- -5'
26982 3' -52.5 NC_005809.1 + 37277 0.66 0.809577
Target:  5'- -gGCCUCGaccuGCCAGACaugcagcaAUCGACG-CUg -3'
miRNA:   3'- cgUGGAGC----UGGUCUGg-------UAGUUGCuGG- -5'
26982 3' -52.5 NC_005809.1 + 37092 1.15 0.000625
Target:  5'- gGCACCUCGACCAGACCAUCAACGACCg -3'
miRNA:   3'- -CGUGGAGCUGGUCUGGUAGUUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.