Results 1 - 20 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26988 | 5' | -57.3 | NC_005809.1 | + | 12811 | 0.65 | 0.531453 |
Target: 5'- cGCGCAcgcgccuggcagcAGCCG-AGGCCGaguucuaCGGCGUGg -3' miRNA: 3'- aUGCGU-------------UCGGCgUUCGGC-------GCUGCACg -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 9482 | 0.66 | 0.522854 |
Target: 5'- aUGgGCGAGgaUGUAGGCCGCcGCGUcGCu -3' miRNA: 3'- -AUgCGUUCg-GCGUUCGGCGcUGCA-CG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 14018 | 0.66 | 0.522854 |
Target: 5'- cGCGCcgcgauGGCCGgcGGCCGCaagguCGUGCc -3' miRNA: 3'- aUGCGu-----UCGGCguUCGGCGcu---GCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 14269 | 0.66 | 0.522854 |
Target: 5'- gUugGCcuGCUGCAccauGCUGuCGGCGaUGCg -3' miRNA: 3'- -AugCGuuCGGCGUu---CGGC-GCUGC-ACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 19570 | 0.66 | 0.522854 |
Target: 5'- gGCGC-AGCaGCAGGCCGaccaGGCGaaaGCc -3' miRNA: 3'- aUGCGuUCGgCGUUCGGCg---CUGCa--CG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 6281 | 0.66 | 0.522854 |
Target: 5'- cUGgGCAGGCCGaaCAGGUCGCccacgacauuGACG-GCa -3' miRNA: 3'- -AUgCGUUCGGC--GUUCGGCG----------CUGCaCG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 37421 | 0.66 | 0.522854 |
Target: 5'- gGCGUGAGCaGCGacGGCCGCcuGCGcgGCa -3' miRNA: 3'- aUGCGUUCGgCGU--UCGGCGc-UGCa-CG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 40897 | 0.66 | 0.522854 |
Target: 5'- --gGCucGCCGCGAGUCcaaGCGcAgGUGCa -3' miRNA: 3'- augCGuuCGGCGUUCGG---CGC-UgCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 8544 | 0.66 | 0.522854 |
Target: 5'- aACGCucgacAGCCGC--GCCGaUGGCGgGCa -3' miRNA: 3'- aUGCGu----UCGGCGuuCGGC-GCUGCaCG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 37287 | 0.66 | 0.522854 |
Target: 5'- gACGCcguGGCCGaCAAcGCCGCGAacaucaacaCGgugGCc -3' miRNA: 3'- aUGCGu--UCGGC-GUU-CGGCGCU---------GCa--CG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 14654 | 0.66 | 0.521784 |
Target: 5'- aACgGCAAGUCcacggugcuggguGCcauCCGCGACGUGCu -3' miRNA: 3'- aUG-CGUUCGG-------------CGuucGGCGCUGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 18609 | 0.66 | 0.518575 |
Target: 5'- cGCGCAugaaucggcaaauGCCGaccucGCCG-GGCGUGCg -3' miRNA: 3'- aUGCGUu------------CGGCguu--CGGCgCUGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 12007 | 0.66 | 0.512183 |
Target: 5'- cACGUcGGCCaGCAgcgcGGCCGUGGcCG-GCg -3' miRNA: 3'- aUGCGuUCGG-CGU----UCGGCGCU-GCaCG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 13700 | 0.66 | 0.512183 |
Target: 5'- cUACGCcAGCaGCGAGgaCGUGGCGcgGCg -3' miRNA: 3'- -AUGCGuUCGgCGUUCg-GCGCUGCa-CG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 37773 | 0.66 | 0.512183 |
Target: 5'- --aGCAAucCCGCAGcGCCaGcCGGCGUGCu -3' miRNA: 3'- augCGUUc-GGCGUU-CGG-C-GCUGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 4381 | 0.66 | 0.512183 |
Target: 5'- aUGCGCAGccaggcGCCGuCGcGCCGgGccuugaGCGUGCg -3' miRNA: 3'- -AUGCGUU------CGGC-GUuCGGCgC------UGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 4922 | 0.66 | 0.512183 |
Target: 5'- aACGUcGGCaGCGAuGcCCGCGACGgucUGCa -3' miRNA: 3'- aUGCGuUCGgCGUU-C-GGCGCUGC---ACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 9721 | 0.66 | 0.512183 |
Target: 5'- aUACGCcucgAAGCCGCGGGCgaacUGCucGugGUGg -3' miRNA: 3'- -AUGCG----UUCGGCGUUCG----GCG--CugCACg -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 24984 | 0.66 | 0.512183 |
Target: 5'- aACGCGcAGCCGUuuAGCUGCGAaaucgacaacacCG-GCg -3' miRNA: 3'- aUGCGU-UCGGCGu-UCGGCGCU------------GCaCG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 25205 | 0.66 | 0.501603 |
Target: 5'- cGCGCGA-CCGCuGGCC-CGGCuuguugGUGCg -3' miRNA: 3'- aUGCGUUcGGCGuUCGGcGCUG------CACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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