miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27019 5' -57.2 NC_005832.1 + 10868 0.66 0.835294
Target:  5'- cGGCCugGgACCAgGACGCCGgggacCG-Ca- -3'
miRNA:   3'- -CCGGugC-UGGUaCUGCGGCa----GCaGca -5'
27019 5' -57.2 NC_005832.1 + 23830 0.66 0.82693
Target:  5'- --aCAUGGCCGUGACugcguccauGCCGUCcUCGg -3'
miRNA:   3'- ccgGUGCUGGUACUG---------CGGCAGcAGCa -5'
27019 5' -57.2 NC_005832.1 + 76105 0.66 0.82693
Target:  5'- gGGCCACGGCCAaGAgGUgagCGUUG-CGc -3'
miRNA:   3'- -CCGGUGCUGGUaCUgCG---GCAGCaGCa -5'
27019 5' -57.2 NC_005832.1 + 31690 0.66 0.818389
Target:  5'- -aCCACGGCCGUGGaccaCGUCGUgGg -3'
miRNA:   3'- ccGGUGCUGGUACUgcg-GCAGCAgCa -5'
27019 5' -57.2 NC_005832.1 + 52944 0.66 0.809678
Target:  5'- aGGCCGCaGACgGUGuccgUGCCGUCGcCc- -3'
miRNA:   3'- -CCGGUG-CUGgUACu---GCGGCAGCaGca -5'
27019 5' -57.2 NC_005832.1 + 95819 0.66 0.804374
Target:  5'- uGGCCGCGGCCGcucccuUGAcCGCCGcagcgggaaagacucUCGcCGc -3'
miRNA:   3'- -CCGGUGCUGGU------ACU-GCGGC---------------AGCaGCa -5'
27019 5' -57.2 NC_005832.1 + 5061 0.66 0.791781
Target:  5'- uGGUCAUGACCAgGAUGCCG--GUCc- -3'
miRNA:   3'- -CCGGUGCUGGUaCUGCGGCagCAGca -5'
27019 5' -57.2 NC_005832.1 + 54469 0.67 0.782612
Target:  5'- aGGCCcccaGCG-CCGcGugGuaGUCGUCGUa -3'
miRNA:   3'- -CCGG----UGCuGGUaCugCggCAGCAGCA- -5'
27019 5' -57.2 NC_005832.1 + 99626 0.67 0.782612
Target:  5'- gGGCCuuGuACCAaaaGACGCUGUCGUg-- -3'
miRNA:   3'- -CCGGugC-UGGUa--CUGCGGCAGCAgca -5'
27019 5' -57.2 NC_005832.1 + 89638 0.67 0.782612
Target:  5'- cGGCCGgGGCCGUGGUGCCaggaGUCa- -3'
miRNA:   3'- -CCGGUgCUGGUACUGCGGcag-CAGca -5'
27019 5' -57.2 NC_005832.1 + 73012 0.67 0.782612
Target:  5'- aGGCCccaaaGGCCccGACGCgccagguagCGUCGUCGc -3'
miRNA:   3'- -CCGGug---CUGGuaCUGCG---------GCAGCAGCa -5'
27019 5' -57.2 NC_005832.1 + 32281 0.67 0.773308
Target:  5'- cGCCGCuccuccGGCCAUGAUGuuGUCuGcCGUg -3'
miRNA:   3'- cCGGUG------CUGGUACUGCggCAG-CaGCA- -5'
27019 5' -57.2 NC_005832.1 + 98713 0.67 0.773308
Target:  5'- aGGCaCAgGGCCGUGaACGCCGgccCGUa-- -3'
miRNA:   3'- -CCG-GUgCUGGUAC-UGCGGCa--GCAgca -5'
27019 5' -57.2 NC_005832.1 + 77077 0.67 0.754329
Target:  5'- cGGCCgguGCGGCCGUcGCGCUGUaccUGUCu- -3'
miRNA:   3'- -CCGG---UGCUGGUAcUGCGGCA---GCAGca -5'
27019 5' -57.2 NC_005832.1 + 1428 0.67 0.754329
Target:  5'- aGCCGuCGAgCAUGACGUgCGgggCGUCGc -3'
miRNA:   3'- cCGGU-GCUgGUACUGCG-GCa--GCAGCa -5'
27019 5' -57.2 NC_005832.1 + 36018 0.67 0.753368
Target:  5'- gGGCCugACGGCCGagcUGGUGCCGUuaaagugCGUCGa -3'
miRNA:   3'- -CCGG--UGCUGGU---ACUGCGGCA-------GCAGCa -5'
27019 5' -57.2 NC_005832.1 + 31297 0.67 0.744673
Target:  5'- gGGCaaggGCGGCCGUGugGCC--CGUCu- -3'
miRNA:   3'- -CCGg---UGCUGGUACugCGGcaGCAGca -5'
27019 5' -57.2 NC_005832.1 + 46297 0.68 0.734918
Target:  5'- uGGCCACGGCCAc--CGCC-UUGUCc- -3'
miRNA:   3'- -CCGGUGCUGGUacuGCGGcAGCAGca -5'
27019 5' -57.2 NC_005832.1 + 49052 0.68 0.71515
Target:  5'- gGGCUACGGCUccGACGUCcUCG-CGUu -3'
miRNA:   3'- -CCGGUGCUGGuaCUGCGGcAGCaGCA- -5'
27019 5' -57.2 NC_005832.1 + 610 0.68 0.71515
Target:  5'- gGGCCcCGACCAgGACGCCGcCcUgGg -3'
miRNA:   3'- -CCGGuGCUGGUaCUGCGGCaGcAgCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.