miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27027 5' -54.9 NC_005832.1 + 6320 0.71 0.684399
Target:  5'- gGGUGGACggGAGGACAgaggacagaauguCCCUAGGcGUcgcUCCc -3'
miRNA:   3'- -CCGCCUG--CUCCUGU-------------GGGAUCU-CA---AGG- -5'
27027 5' -54.9 NC_005832.1 + 67597 0.66 0.91041
Target:  5'- uGCGGGC-AGGG-ACCCgGGAGacUUCCa -3'
miRNA:   3'- cCGCCUGcUCCUgUGGGaUCUC--AAGG- -5'
27027 5' -54.9 NC_005832.1 + 54241 0.67 0.853988
Target:  5'- aGGgGGAgCGccGGAUguaaagACCCUAGAG-UCCg -3'
miRNA:   3'- -CCgCCU-GCu-CCUG------UGGGAUCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 37547 0.71 0.664773
Target:  5'- gGGUGGGCGAGG---CCgUAGAGUUUg -3'
miRNA:   3'- -CCGCCUGCUCCuguGGgAUCUCAAGg -5'
27027 5' -54.9 NC_005832.1 + 92549 0.67 0.884038
Target:  5'- aGGaCGcGACGGGGACGgCUCUGGGcugCCu -3'
miRNA:   3'- -CC-GC-CUGCUCCUGU-GGGAUCUcaaGG- -5'
27027 5' -54.9 NC_005832.1 + 10191 0.66 0.916399
Target:  5'- aGGCGGugGAGaGgAUCCUcauGAcUUCCg -3'
miRNA:   3'- -CCGCCugCUCcUgUGGGAu--CUcAAGG- -5'
27027 5' -54.9 NC_005832.1 + 6865 0.66 0.904176
Target:  5'- gGGUGGuauguucCGAGucccACACCCUGGGGUagugggggaggcUCCu -3'
miRNA:   3'- -CCGCCu------GCUCc---UGUGGGAUCUCA------------AGG- -5'
27027 5' -54.9 NC_005832.1 + 79860 0.71 0.664773
Target:  5'- aGGaaGAUGAGGGCuCCCUcuggcaGGGGUUCUg -3'
miRNA:   3'- -CCgcCUGCUCCUGuGGGA------UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 83429 0.71 0.6544
Target:  5'- gGGCcGGCGGGGACAUagaagagggCCUGGAGcUCUu -3'
miRNA:   3'- -CCGcCUGCUCCUGUG---------GGAUCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 39424 0.69 0.755785
Target:  5'- aGGUGGACGuGGACuccgucugcGCCCgcgGGGccccuuuacgccGUUCCu -3'
miRNA:   3'- -CCGCCUGCuCCUG---------UGGGa--UCU------------CAAGG- -5'
27027 5' -54.9 NC_005832.1 + 50399 0.68 0.837694
Target:  5'- cGGCGGcagaGAGGugGCCCUcGAcg-CCc -3'
miRNA:   3'- -CCGCCug--CUCCugUGGGAuCUcaaGG- -5'
27027 5' -54.9 NC_005832.1 + 64110 0.71 0.6544
Target:  5'- cGGuCGGGcCGAGG-CugUCgugAGAGUUCCc -3'
miRNA:   3'- -CC-GCCU-GCUCCuGugGGa--UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 72567 0.66 0.91041
Target:  5'- uGgGGACGuGGGGC-CCCUGGGcUUCa -3'
miRNA:   3'- cCgCCUGC-UCCUGuGGGAUCUcAAGg -5'
27027 5' -54.9 NC_005832.1 + 13101 0.66 0.897701
Target:  5'- aGCcuuGAUGAGGGCGCCCUu---UUCCa -3'
miRNA:   3'- cCGc--CUGCUCCUGUGGGAucucAAGG- -5'
27027 5' -54.9 NC_005832.1 + 9325 0.66 0.890987
Target:  5'- uGGCc-GCGAGGA-ACUCUAGGGUgUCCu -3'
miRNA:   3'- -CCGccUGCUCCUgUGGGAUCUCA-AGG- -5'
27027 5' -54.9 NC_005832.1 + 96106 0.67 0.884038
Target:  5'- cGCGG-UGAGGuuCGCCCUggaacccuucaaGGAG-UCCa -3'
miRNA:   3'- cCGCCuGCUCCu-GUGGGA------------UCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 5775 0.67 0.884038
Target:  5'- uGGUGGACGGGGAUcccgugGCCCUuaacAGGcaacCCa -3'
miRNA:   3'- -CCGCCUGCUCCUG------UGGGA----UCUcaa-GG- -5'
27027 5' -54.9 NC_005832.1 + 5400 0.7 0.7059
Target:  5'- cGGUGGugGGuccagacGGCACCCUGGAGg--- -3'
miRNA:   3'- -CCGCCugCUc------CUGUGGGAUCUCaagg -5'
27027 5' -54.9 NC_005832.1 + 6494 0.7 0.7059
Target:  5'- cGGCGGAugaCGAGGACggggugucugugGCCCUGugcGGggCCa -3'
miRNA:   3'- -CCGCCU---GCUCCUG------------UGGGAUc--UCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 54716 0.7 0.716045
Target:  5'- aGGUggGGACGGGGuucgACGCCUgcgAGAGgaCCg -3'
miRNA:   3'- -CCG--CCUGCUCC----UGUGGGa--UCUCaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.