miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27028 5' -56.5 NC_005832.1 + 62157 0.68 0.74361
Target:  5'- aCUGACGaGCAGauGGCCCUCuAugGguaaCCGUCu -3'
miRNA:   3'- -GGCUGC-CGUU--CUGGGAG-UugC----GGCAG- -5'
27028 5' -56.5 NC_005832.1 + 59873 0.69 0.70372
Target:  5'- aCGACGGgcaGAGACCCgc-GCGaCCGUg -3'
miRNA:   3'- gGCUGCCg--UUCUGGGaguUGC-GGCAg -5'
27028 5' -56.5 NC_005832.1 + 58363 0.67 0.772517
Target:  5'- gUCGAUGGaauuuGGACCCUUGAgaCCGUCg -3'
miRNA:   3'- -GGCUGCCgu---UCUGGGAGUUgcGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 56947 0.68 0.733762
Target:  5'- aUCGGCGGUAAuguccuGAUCCgucacCAugGUCGUCa -3'
miRNA:   3'- -GGCUGCCGUU------CUGGGa----GUugCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 56160 0.74 0.407786
Target:  5'- uUGACGGCcguGGuACCCUUGACGUCGUa -3'
miRNA:   3'- gGCUGCCGu--UC-UGGGAGUUGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 56145 0.71 0.549906
Target:  5'- uCCGGgGGCAAGACCC--AGgGCCG-Cg -3'
miRNA:   3'- -GGCUgCCGUUCUGGGagUUgCGGCaG- -5'
27028 5' -56.5 NC_005832.1 + 54811 0.7 0.600936
Target:  5'- gCCGACGGgGGGACCgUCcugGACcCCGUg -3'
miRNA:   3'- -GGCUGCCgUUCUGGgAG---UUGcGGCAg -5'
27028 5' -56.5 NC_005832.1 + 54480 0.67 0.809231
Target:  5'- cCCGcCGaaaAAGGCCCcCAGCGCCG-Cg -3'
miRNA:   3'- -GGCuGCcg-UUCUGGGaGUUGCGGCaG- -5'
27028 5' -56.5 NC_005832.1 + 53977 0.79 0.20198
Target:  5'- cCCGGCuucGGCAAGACCUUCAugGCCc-- -3'
miRNA:   3'- -GGCUG---CCGUUCUGGGAGUugCGGcag -5'
27028 5' -56.5 NC_005832.1 + 53042 0.69 0.662844
Target:  5'- gUCGcCGGCAGGAUCCUgAGgGCCa-- -3'
miRNA:   3'- -GGCuGCCGUUCUGGGAgUUgCGGcag -5'
27028 5' -56.5 NC_005832.1 + 50937 0.67 0.78191
Target:  5'- aCGACGGUAGGACUggaUCGGC-CgGUCc -3'
miRNA:   3'- gGCUGCCGUUCUGGg--AGUUGcGgCAG- -5'
27028 5' -56.5 NC_005832.1 + 50400 0.81 0.160741
Target:  5'- aCGGCGGCAGagagguGGCCCUCGACGCCcgacucugcuugGUCa -3'
miRNA:   3'- gGCUGCCGUU------CUGGGAGUUGCGG------------CAG- -5'
27028 5' -56.5 NC_005832.1 + 49188 0.7 0.639121
Target:  5'- cCCGACguGGCGuuugcGGaaaugucuauagacGCCUUCAACGCCGUg -3'
miRNA:   3'- -GGCUG--CCGU-----UC--------------UGGGAGUUGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 45965 0.67 0.791166
Target:  5'- aCCGACGG-GGGuCCagaguaCAugGCCGUCc -3'
miRNA:   3'- -GGCUGCCgUUCuGGga----GUugCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 44535 0.7 0.63189
Target:  5'- gCGGCgugcaagcugGGCAAGACCUaCGACGCCa-- -3'
miRNA:   3'- gGCUG----------CCGUUCUGGGaGUUGCGGcag -5'
27028 5' -56.5 NC_005832.1 + 43351 0.66 0.859242
Target:  5'- -aGAC-GC-GGACCCcgCAGCGCCGg- -3'
miRNA:   3'- ggCUGcCGuUCUGGGa-GUUGCGGCag -5'
27028 5' -56.5 NC_005832.1 + 41307 0.72 0.500291
Target:  5'- uCCGACaGGaGAGcguCCCUgAugGCCGUCa -3'
miRNA:   3'- -GGCUG-CCgUUCu--GGGAgUugCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 39499 0.71 0.574272
Target:  5'- gCCGAUcccucugcuccccugGGCcccuGGGCCCUgGuCGCCGUCg -3'
miRNA:   3'- -GGCUG---------------CCGu---UCUGGGAgUuGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 39410 0.66 0.843332
Target:  5'- uCCGucuGCGcccGCGGGGcCCCUUuACGCCGUUc -3'
miRNA:   3'- -GGC---UGC---CGUUCU-GGGAGuUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 33475 0.69 0.673123
Target:  5'- cCCG-CGGC--GACCCUCAggggacucgACGCCaagGUCa -3'
miRNA:   3'- -GGCuGCCGuuCUGGGAGU---------UGCGG---CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.