miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27031 5' -57.2 NC_005832.1 + 36602 0.66 0.796592
Target:  5'- aCGGcGGGCCccCAcGGCugCAGGUGCGGa -3'
miRNA:   3'- -GCC-UCCGGuaGUaCCG--GUCCAUGCUg -5'
27031 5' -57.2 NC_005832.1 + 39603 0.66 0.796592
Target:  5'- gGaGAGGCCGgauUCGUGGCCccauagucGGUG-GACg -3'
miRNA:   3'- gC-CUCCGGU---AGUACCGGu-------CCAUgCUG- -5'
27031 5' -57.2 NC_005832.1 + 45961 0.66 0.795673
Target:  5'- aCGGGGGuCCAgaguaCAUGGCCGuccucuacaagcuGGUgAUGGCu -3'
miRNA:   3'- -GCCUCC-GGUa----GUACCGGU-------------CCA-UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 97396 0.66 0.78733
Target:  5'- -cGAGGCC-----GGCCAGGcugGCGACu -3'
miRNA:   3'- gcCUCCGGuaguaCCGGUCCa--UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 39864 0.66 0.78733
Target:  5'- uGG-GGCCAgag-GGCCcaaAGGgagACGACg -3'
miRNA:   3'- gCCuCCGGUaguaCCGG---UCCa--UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 103473 0.66 0.777923
Target:  5'- gCGGAGGUCcUCggGGuCCAGGacUACG-Ca -3'
miRNA:   3'- -GCCUCCGGuAGuaCC-GGUCC--AUGCuG- -5'
27031 5' -57.2 NC_005832.1 + 89475 0.66 0.768381
Target:  5'- uGGuAGGCCAUgGUGGCCuccaucaccuuGGGagGgGGCa -3'
miRNA:   3'- gCC-UCCGGUAgUACCGG-----------UCCa-UgCUG- -5'
27031 5' -57.2 NC_005832.1 + 39450 0.66 0.758712
Target:  5'- cCGGGGGggGUCAUGcuagacccGCCAGGUG-GACg -3'
miRNA:   3'- -GCCUCCggUAGUAC--------CGGUCCAUgCUG- -5'
27031 5' -57.2 NC_005832.1 + 91762 0.66 0.748927
Target:  5'- gGGAGGCg---GUGGCgGGG-ACGGCa -3'
miRNA:   3'- gCCUCCGguagUACCGgUCCaUGCUG- -5'
27031 5' -57.2 NC_005832.1 + 47988 0.66 0.748927
Target:  5'- gCGGGGGCCAUaauccugaGGCCGGGaaaGAa -3'
miRNA:   3'- -GCCUCCGGUAgua-----CCGGUCCaugCUg -5'
27031 5' -57.2 NC_005832.1 + 32143 0.67 0.739036
Target:  5'- aCGGcAGacaaCAUCAUGGCCggAGGaGCGGCg -3'
miRNA:   3'- -GCC-UCcg--GUAGUACCGG--UCCaUGCUG- -5'
27031 5' -57.2 NC_005832.1 + 10012 0.67 0.729048
Target:  5'- gCGGAGGCC---GUGGCUcacgugAGGcuggACGGCg -3'
miRNA:   3'- -GCCUCCGGuagUACCGG------UCCa---UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 46259 0.67 0.729048
Target:  5'- aGGGGuGUCcUgAUGGCCAGGaGgGACa -3'
miRNA:   3'- gCCUC-CGGuAgUACCGGUCCaUgCUG- -5'
27031 5' -57.2 NC_005832.1 + 40860 0.67 0.729048
Target:  5'- cCGGGGGCaucuUUAcGGCCAGGUcCGuCu -3'
miRNA:   3'- -GCCUCCGgu--AGUaCCGGUCCAuGCuG- -5'
27031 5' -57.2 NC_005832.1 + 80029 0.67 0.729048
Target:  5'- --aGGGCCcUCGaGaCCAGGUACGACu -3'
miRNA:   3'- gccUCCGGuAGUaCcGGUCCAUGCUG- -5'
27031 5' -57.2 NC_005832.1 + 67092 0.67 0.718972
Target:  5'- uGGAGGCCAcucCGUacgaGGCCAGGgAgGAa -3'
miRNA:   3'- gCCUCCGGUa--GUA----CCGGUCCaUgCUg -5'
27031 5' -57.2 NC_005832.1 + 72069 0.67 0.718972
Target:  5'- uGGcGGCCGUCGUGGUgGGaGUGagGAUg -3'
miRNA:   3'- gCCuCCGGUAGUACCGgUC-CAUg-CUG- -5'
27031 5' -57.2 NC_005832.1 + 9636 0.67 0.718972
Target:  5'- -uGAuGGCCugcguUCA-GGCCAGGgcCGACg -3'
miRNA:   3'- gcCU-CCGGu----AGUaCCGGUCCauGCUG- -5'
27031 5' -57.2 NC_005832.1 + 41878 0.67 0.718972
Target:  5'- aCGGGuuucucccuGGCCAcCAUGGCCGGGaACu-- -3'
miRNA:   3'- -GCCU---------CCGGUaGUACCGGUCCaUGcug -5'
27031 5' -57.2 NC_005832.1 + 56144 0.67 0.70882
Target:  5'- cCGGGGGCaagaccCAgGGCCGcGUACGGCu -3'
miRNA:   3'- -GCCUCCGgua---GUaCCGGUcCAUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.