Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27037 | 3' | -47 | NC_005832.1 | + | 44763 | 0.66 | 0.998992 |
Target: 5'- cCGAGUAgAGGAcGCUGUCcCAGCaGUCu -3' miRNA: 3'- uGUUCAUgUUUU-UGACGGuGUCG-CAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 66656 | 0.66 | 0.998992 |
Target: 5'- -uGGGU-CAGAcGCUGCCACcccaaaGGCGUa -3' miRNA: 3'- ugUUCAuGUUUuUGACGGUG------UCGCAg -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 16514 | 0.66 | 0.998992 |
Target: 5'- gGCAuAGUACcAGGGCUGCaC-CAGCGa- -3' miRNA: 3'- -UGU-UCAUGuUUUUGACG-GuGUCGCag -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 12768 | 0.66 | 0.998992 |
Target: 5'- ---cGUGCAGGGccccGCacGCCAgGGCGUCa -3' miRNA: 3'- uguuCAUGUUUU----UGa-CGGUgUCGCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 467 | 0.66 | 0.998757 |
Target: 5'- ----aUACAGAAGgaGCCcaggGCGGCGUCc -3' miRNA: 3'- uguucAUGUUUUUgaCGG----UGUCGCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 44836 | 0.66 | 0.998757 |
Target: 5'- aGCAguGGUGCAAAAuCUcUCACGGgGUCu -3' miRNA: 3'- -UGU--UCAUGUUUUuGAcGGUGUCgCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 18679 | 0.66 | 0.998146 |
Target: 5'- aGCAAGaUugGAAAggGCUGCacccucguCAUGGCGUCu -3' miRNA: 3'- -UGUUC-AugUUUU--UGACG--------GUGUCGCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 77213 | 0.67 | 0.997756 |
Target: 5'- gACAGGUACAGcgcGACgGCCGCAcCGg- -3' miRNA: 3'- -UGUUCAUGUUu--UUGaCGGUGUcGCag -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 56901 | 0.67 | 0.997299 |
Target: 5'- aGCAGGcGCAg-----GCCGCGGUGUCu -3' miRNA: 3'- -UGUUCaUGUuuuugaCGGUGUCGCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 98525 | 0.67 | 0.996154 |
Target: 5'- gGCAAGgACAGAcGCUGCgGCAGacagGUUa -3' miRNA: 3'- -UGUUCaUGUUUuUGACGgUGUCg---CAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 2187 | 0.67 | 0.996154 |
Target: 5'- gACGucauGGUcCAGcAAAUUGCCACGGCGg- -3' miRNA: 3'- -UGU----UCAuGUU-UUUGACGGUGUCGCag -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 35109 | 0.67 | 0.996154 |
Target: 5'- aGCAGGUACGuguAC-GCgGCAGUGUg -3' miRNA: 3'- -UGUUCAUGUuuuUGaCGgUGUCGCAg -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 97633 | 0.67 | 0.995447 |
Target: 5'- aGCAGGcUGgAGAAGgUGuCCGCGGCGgUCg -3' miRNA: 3'- -UGUUC-AUgUUUUUgAC-GGUGUCGC-AG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 1087 | 0.68 | 0.994638 |
Target: 5'- -aAAGUACcu-GGC-GCaCACGGCGUCg -3' miRNA: 3'- ugUUCAUGuuuUUGaCG-GUGUCGCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 51081 | 0.68 | 0.990168 |
Target: 5'- gGCAAGgGCAuAGACggGCCAUAGggaGUCa -3' miRNA: 3'- -UGUUCaUGUuUUUGa-CGGUGUCg--CAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 26458 | 0.68 | 0.98974 |
Target: 5'- gGCGAGgcCAccgggcagagguucGGAACUGCgACAGCaGUCc -3' miRNA: 3'- -UGUUCauGU--------------UUUUGACGgUGUCG-CAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 97136 | 0.69 | 0.987039 |
Target: 5'- -uGAGgGCAAAGGCUGCgGCAGaCGcCg -3' miRNA: 3'- ugUUCaUGUUUUUGACGgUGUC-GCaG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 54775 | 0.69 | 0.985212 |
Target: 5'- gACAGGUACuuuGAGCagUGCCugGGCa-- -3' miRNA: 3'- -UGUUCAUGuu-UUUG--ACGGugUCGcag -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 90091 | 0.69 | 0.983195 |
Target: 5'- -----cACAAAGAUgGCCGCGGCGUUc -3' miRNA: 3'- uguucaUGUUUUUGaCGGUGUCGCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 98364 | 0.69 | 0.982551 |
Target: 5'- gACAuGUcuaaGCAAAccGGCUGCCcuaaccugucugccGCAGCGUCu -3' miRNA: 3'- -UGUuCA----UGUUU--UUGACGG--------------UGUCGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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