miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27079 3' -52.7 NC_005832.1 + 52188 0.66 0.956778
Target:  5'- -gCAGugCA-GAGG-CUgaGGGCCAUCg -3'
miRNA:   3'- gaGUCugGUaUUCCuGAa-CCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 95048 0.66 0.956778
Target:  5'- cCUC--ACCGccGGGGCagGGGCCugCg -3'
miRNA:   3'- -GAGucUGGUauUCCUGaaCCCGGugG- -5'
27079 3' -52.7 NC_005832.1 + 43938 0.66 0.956778
Target:  5'- ----cACCGgcAGGGCcccgUGGGCCAUCu -3'
miRNA:   3'- gagucUGGUauUCCUGa---ACCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 48108 0.66 0.952695
Target:  5'- cCUgAGGCUGgugagcugGAGGACUggcUGGGCC-CUg -3'
miRNA:   3'- -GAgUCUGGUa-------UUCCUGA---ACCCGGuGG- -5'
27079 3' -52.7 NC_005832.1 + 79878 0.66 0.952695
Target:  5'- -gCAGGCCG--AGGAga-GGGCgGCCa -3'
miRNA:   3'- gaGUCUGGUauUCCUgaaCCCGgUGG- -5'
27079 3' -52.7 NC_005832.1 + 43162 0.66 0.948359
Target:  5'- gUCAGGCU---GGGAaa-GGGCCuGCCg -3'
miRNA:   3'- gAGUCUGGuauUCCUgaaCCCGG-UGG- -5'
27079 3' -52.7 NC_005832.1 + 47733 0.66 0.943768
Target:  5'- -aCAGGCCAgagacgAGGGACcucucgUUGGGgUACUg -3'
miRNA:   3'- gaGUCUGGUa-----UUCCUG------AACCCgGUGG- -5'
27079 3' -52.7 NC_005832.1 + 99713 0.66 0.938919
Target:  5'- uCUCcauGACUGUGGGGuagagcuuCUUGGG-CACCa -3'
miRNA:   3'- -GAGu--CUGGUAUUCCu-------GAACCCgGUGG- -5'
27079 3' -52.7 NC_005832.1 + 20789 0.66 0.938919
Target:  5'- cCUCaccaGGGCgGUAAGGuACUcUGGGCCGgUg -3'
miRNA:   3'- -GAG----UCUGgUAUUCC-UGA-ACCCGGUgG- -5'
27079 3' -52.7 NC_005832.1 + 40820 0.66 0.938919
Target:  5'- --aGGGCCAggccGGACcugGGaGCCACCc -3'
miRNA:   3'- gagUCUGGUauu-CCUGaa-CC-CGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 28054 0.66 0.933809
Target:  5'- gCUCAGGCCcuguccagggugGUGGGGACcaaGaGGCCcuuuGCCg -3'
miRNA:   3'- -GAGUCUGG------------UAUUCCUGaa-C-CCGG----UGG- -5'
27079 3' -52.7 NC_005832.1 + 6639 0.67 0.928437
Target:  5'- -gCAGAUagc-GGGGCUccUGGGCCAgCa -3'
miRNA:   3'- gaGUCUGguauUCCUGA--ACCCGGUgG- -5'
27079 3' -52.7 NC_005832.1 + 41575 0.67 0.928437
Target:  5'- gCUgAGGCCGagGAGGA----GGCCGCCg -3'
miRNA:   3'- -GAgUCUGGUa-UUCCUgaacCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 46196 0.67 0.916905
Target:  5'- gCUCAGGCCcuccugGAGGACa-GGGaCC-CCu -3'
miRNA:   3'- -GAGUCUGGua----UUCCUGaaCCC-GGuGG- -5'
27079 3' -52.7 NC_005832.1 + 10507 0.67 0.916905
Target:  5'- gUCAGACagcAGGGACa--GGCCGCUg -3'
miRNA:   3'- gAGUCUGguaUUCCUGaacCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 1467 0.67 0.916905
Target:  5'- --gGGuuGCCGUGAGGACcaagagggGGGCCugUg -3'
miRNA:   3'- gagUC--UGGUAUUCCUGaa------CCCGGugG- -5'
27079 3' -52.7 NC_005832.1 + 47930 0.67 0.910746
Target:  5'- cCUCAGAguuuaCCuccAGGuCcaGGGCCACCa -3'
miRNA:   3'- -GAGUCU-----GGuauUCCuGaaCCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 55988 0.68 0.897653
Target:  5'- -aCAGACUAcugGGGGACggUGGaccCCACCa -3'
miRNA:   3'- gaGUCUGGUa--UUCCUGa-ACCc--GGUGG- -5'
27079 3' -52.7 NC_005832.1 + 94203 0.68 0.897653
Target:  5'- uUCGGGCCucAAGuACaucaGGGCCGCCa -3'
miRNA:   3'- gAGUCUGGuaUUCcUGaa--CCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 80775 0.68 0.890724
Target:  5'- gUCGGACCAaGAGGGgUUGGGgaugaggACCg -3'
miRNA:   3'- gAGUCUGGUaUUCCUgAACCCgg-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.