miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27083 3' -55.8 NC_005832.1 + 91558 0.66 0.859233
Target:  5'- aCAGGcacaGGGAGGCcaugguccuGUCCaUCCACCCg -3'
miRNA:   3'- -GUCUcuacCUCUCCG---------UAGG-AGGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 96770 0.66 0.859233
Target:  5'- aGGAGggGGuGAcaacguccacGGCGUCCcuggugcucUCCACCUc -3'
miRNA:   3'- gUCUCuaCCuCU----------CCGUAGG---------AGGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 15441 0.66 0.843046
Target:  5'- cCAGAG--GGAGAGGCccacaucgaaGUCCUgUGCCg -3'
miRNA:   3'- -GUCUCuaCCUCUCCG----------UAGGAgGUGGg -5'
27083 3' -55.8 NC_005832.1 + 50626 0.66 0.834645
Target:  5'- aCGGAGgcGGAGAguggcugucugcGGaCAUUCUCCugauagagGCCCa -3'
miRNA:   3'- -GUCUCuaCCUCU------------CC-GUAGGAGG--------UGGG- -5'
27083 3' -55.8 NC_005832.1 + 5916 0.66 0.826051
Target:  5'- aCGGGGAc-GAG-GGCAaCCUCUACCUc -3'
miRNA:   3'- -GUCUCUacCUCuCCGUaGGAGGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 65603 0.67 0.81727
Target:  5'- aCGGGGAcGuGAG-GGCccCCUCuCGCCCa -3'
miRNA:   3'- -GUCUCUaC-CUCuCCGuaGGAG-GUGGG- -5'
27083 3' -55.8 NC_005832.1 + 47389 0.67 0.81727
Target:  5'- aCAGAGAUGGcaaaagugugcAG-GGUAaacgCCUUUACCCu -3'
miRNA:   3'- -GUCUCUACC-----------UCuCCGUa---GGAGGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 32744 0.67 0.816382
Target:  5'- uGGAGGUGucugcGGGAGGCAggagaaacgUCCUUCccuucagGCCCg -3'
miRNA:   3'- gUCUCUAC-----CUCUCCGU---------AGGAGG-------UGGG- -5'
27083 3' -55.8 NC_005832.1 + 101907 0.67 0.808313
Target:  5'- gCAGGGGccagguuuuUGGAGuGGCAUgCguuagagggaCCGCCCa -3'
miRNA:   3'- -GUCUCU---------ACCUCuCCGUAgGa---------GGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 5703 0.67 0.808313
Target:  5'- gGGAGAcGGuGAccaGGCcgCCUCCguuuucgugGCCCa -3'
miRNA:   3'- gUCUCUaCCuCU---CCGuaGGAGG---------UGGG- -5'
27083 3' -55.8 NC_005832.1 + 53970 0.67 0.808313
Target:  5'- -uGAGcgGGAGGuGGUuugCCUCCcaggACCCu -3'
miRNA:   3'- guCUCuaCCUCU-CCGua-GGAGG----UGGG- -5'
27083 3' -55.8 NC_005832.1 + 93987 0.67 0.808313
Target:  5'- --aAGAUGGAgGAGGagaaggCC-CCACCCg -3'
miRNA:   3'- gucUCUACCU-CUCCgua---GGaGGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 12025 0.67 0.799187
Target:  5'- aGGAGucuugacgGGGGuGGgAUCCUCuCACCUc -3'
miRNA:   3'- gUCUCua------CCUCuCCgUAGGAG-GUGGG- -5'
27083 3' -55.8 NC_005832.1 + 1244 0.67 0.789902
Target:  5'- aCGGGGAacauccuGGGCAUCCUCCuguCCCu -3'
miRNA:   3'- -GUCUCUaccuc--UCCGUAGGAGGu--GGG- -5'
27083 3' -55.8 NC_005832.1 + 71162 0.67 0.789902
Target:  5'- uUAGGGGcUGGAGAGGC--UCUCCGgCg -3'
miRNA:   3'- -GUCUCU-ACCUCUCCGuaGGAGGUgGg -5'
27083 3' -55.8 NC_005832.1 + 20334 0.68 0.75136
Target:  5'- gGGAGAUGGAcaguccGGGGCccUUCUCCGCa- -3'
miRNA:   3'- gUCUCUACCU------CUCCGu-AGGAGGUGgg -5'
27083 3' -55.8 NC_005832.1 + 35490 0.68 0.75136
Target:  5'- -----cUGGGGAGaCGUCCUCCGuCCCu -3'
miRNA:   3'- gucucuACCUCUCcGUAGGAGGU-GGG- -5'
27083 3' -55.8 NC_005832.1 + 10952 0.68 0.741424
Target:  5'- gGGAGGUGcuGGGAGGCA-CCggcaugacCCACCUc -3'
miRNA:   3'- gUCUCUAC--CUCUCCGUaGGa-------GGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 10124 0.68 0.731387
Target:  5'- uCAGAGucuAUGGAccugGGGGUGUCC-CUGCCCc -3'
miRNA:   3'- -GUCUC---UACCU----CUCCGUAGGaGGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 36170 0.68 0.731387
Target:  5'- uGGGGAUGGuuGAGGgGUCagagUCgGCCCu -3'
miRNA:   3'- gUCUCUACCu-CUCCgUAGg---AGgUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.