miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27083 5' -53.9 NC_005832.1 + 41426 0.66 0.9244
Target:  5'- -cGAGGGcgccucccuGACGGCgGCGgccuCCUCCu -3'
miRNA:   3'- aaCUCUC---------UUGCCGgUGCagauGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 87247 0.66 0.9244
Target:  5'- -gGAGAGccuGAgGGCCauggucaagGCGUCUGgaaacuggcCCUCCa -3'
miRNA:   3'- aaCUCUC---UUgCCGG---------UGCAGAU---------GGAGG- -5'
27083 5' -53.9 NC_005832.1 + 88146 0.66 0.9244
Target:  5'- -cGAGAGGACccuGGCCAgGcUCcuggACCUuCCa -3'
miRNA:   3'- aaCUCUCUUG---CCGGUgC-AGa---UGGA-GG- -5'
27083 5' -53.9 NC_005832.1 + 97290 0.66 0.9244
Target:  5'- -aGGGAGuccaGGCUcuuugccacgGCGUCUGCCgcagCCu -3'
miRNA:   3'- aaCUCUCuug-CCGG----------UGCAGAUGGa---GG- -5'
27083 5' -53.9 NC_005832.1 + 47901 0.66 0.91861
Target:  5'- cUGGccGAGAGgGGCUACGUCgugcagcagUACC-CCa -3'
miRNA:   3'- aACU--CUCUUgCCGGUGCAG---------AUGGaGG- -5'
27083 5' -53.9 NC_005832.1 + 5833 0.66 0.91861
Target:  5'- --cGGAG-GCGGCCugGUC-ACCgucUCCc -3'
miRNA:   3'- aacUCUCuUGCCGGugCAGaUGG---AGG- -5'
27083 5' -53.9 NC_005832.1 + 103686 0.66 0.912562
Target:  5'- -gGAGAGAuccugaGCaGCCugGUaggACCUCUc -3'
miRNA:   3'- aaCUCUCU------UGcCGGugCAga-UGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 7533 0.66 0.912562
Target:  5'- -cGAGGGcACGGaccCCGCGUCguccagccacCCUCCc -3'
miRNA:   3'- aaCUCUCuUGCC---GGUGCAGau--------GGAGG- -5'
27083 5' -53.9 NC_005832.1 + 104108 0.66 0.912562
Target:  5'- -gGGGcAGggUGGCCGCGUUuaUGCacaUCUg -3'
miRNA:   3'- aaCUC-UCuuGCCGGUGCAG--AUGg--AGG- -5'
27083 5' -53.9 NC_005832.1 + 22733 0.66 0.908809
Target:  5'- -gGGGAGGauuugccccuguuccAUGGCCACGUC-GCagaaaUCCa -3'
miRNA:   3'- aaCUCUCU---------------UGCCGGUGCAGaUGg----AGG- -5'
27083 5' -53.9 NC_005832.1 + 10812 0.66 0.906256
Target:  5'- ---uGAGGugGGUCAUGcCggUGCCUCCc -3'
miRNA:   3'- aacuCUCUugCCGGUGCaG--AUGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 48693 0.66 0.892883
Target:  5'- gUGcGGAGucuuuuACGGCaagUACGUCgaaGCCUCCg -3'
miRNA:   3'- aAC-UCUCu-----UGCCG---GUGCAGa--UGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 59958 0.67 0.878518
Target:  5'- -aGGGGGuucgucaccAACGuCUGCGUCUACUUCCa -3'
miRNA:   3'- aaCUCUC---------UUGCcGGUGCAGAUGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 23559 0.67 0.8632
Target:  5'- -aGAGGGGGCGGgCAagcCGUUUACuCUCa -3'
miRNA:   3'- aaCUCUCUUGCCgGU---GCAGAUG-GAGg -5'
27083 5' -53.9 NC_005832.1 + 66785 0.67 0.8632
Target:  5'- cUGAGAGAccugacacagcACGgacGCCACGUucCUGCC-CCu -3'
miRNA:   3'- aACUCUCU-----------UGC---CGGUGCA--GAUGGaGG- -5'
27083 5' -53.9 NC_005832.1 + 94816 0.67 0.8632
Target:  5'- -cGGGAGGACccugucuaGGCUAaaGUCUgcgGCCUCCa -3'
miRNA:   3'- aaCUCUCUUG--------CCGGUg-CAGA---UGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 53797 0.67 0.855198
Target:  5'- -cGGGGGAAaGGCCuACGUCc-CCUUCg -3'
miRNA:   3'- aaCUCUCUUgCCGG-UGCAGauGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 29726 0.68 0.850291
Target:  5'- -gGAGAGGuuccuggacuccaggACGGCUGcCGUgUGCCUCa -3'
miRNA:   3'- aaCUCUCU---------------UGCCGGU-GCAgAUGGAGg -5'
27083 5' -53.9 NC_005832.1 + 15519 0.68 0.846977
Target:  5'- cUUGAGgcAGAuUGGCCugGgc-ACCUCCa -3'
miRNA:   3'- -AACUC--UCUuGCCGGugCagaUGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 2517 0.68 0.846977
Target:  5'- gUGGGAGcccccGACGGCCuCGUgUcCUUCCa -3'
miRNA:   3'- aACUCUC-----UUGCCGGuGCAgAuGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.