miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27122 5' -55.8 NC_005832.1 + 10869 0.66 0.857916
Target:  5'- --uCGGCCUGGGACCaGgaCgCCGGGGa -3'
miRNA:   3'- cucGUCGGAUUUUGGcCgaG-GGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 76056 0.66 0.849885
Target:  5'- gGGGCGGCCUAcguccacaGGACCagggugGGUUCCCaccAGGc -3'
miRNA:   3'- -CUCGUCGGAU--------UUUGG------CCGAGGGc--UCC- -5'
27122 5' -55.8 NC_005832.1 + 1649 0.66 0.841646
Target:  5'- cGGCAGU--GAGGCuggCGGCUCCCGAc- -3'
miRNA:   3'- cUCGUCGgaUUUUG---GCCGAGGGCUcc -5'
27122 5' -55.8 NC_005832.1 + 44259 0.66 0.833207
Target:  5'- aAGCAGUCUGAAGagGGCUaCCUGgacAGGg -3'
miRNA:   3'- cUCGUCGGAUUUUggCCGA-GGGC---UCC- -5'
27122 5' -55.8 NC_005832.1 + 91335 0.66 0.833207
Target:  5'- cGAGUAGUCUGcGAGCCuGGUgacccugCCCGGGu -3'
miRNA:   3'- -CUCGUCGGAU-UUUGG-CCGa------GGGCUCc -5'
27122 5' -55.8 NC_005832.1 + 60255 0.66 0.8237
Target:  5'- gGAGCGGUUUAcucuugcGGAUCGGCg-CUGAGGg -3'
miRNA:   3'- -CUCGUCGGAU-------UUUGGCCGagGGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 42400 0.67 0.815756
Target:  5'- gGAGCAGCacgcguCC-GCcCCCGAGGa -3'
miRNA:   3'- -CUCGUCGgauuuuGGcCGaGGGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 19918 0.67 0.806763
Target:  5'- uGGCGGCCUcguccACgGGCg-CCGGGGg -3'
miRNA:   3'- cUCGUCGGAuuu--UGgCCGagGGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 67252 0.67 0.806763
Target:  5'- gGGGCuGCCUcucuacccgguGAGGCUguGGCUgUCGAGGg -3'
miRNA:   3'- -CUCGuCGGA-----------UUUUGG--CCGAgGGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 32488 0.67 0.797603
Target:  5'- uGGCGGCCUGccguACacauggaGGUUgCCCGGGGu -3'
miRNA:   3'- cUCGUCGGAUuu--UGg------CCGA-GGGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 91112 0.67 0.788284
Target:  5'- cGGgAGCCUAccuAAACUGGCUCC--AGGu -3'
miRNA:   3'- cUCgUCGGAU---UUUGGCCGAGGgcUCC- -5'
27122 5' -55.8 NC_005832.1 + 64091 0.67 0.769213
Target:  5'- aGGuCGGCCUugacAGAGCCGGUcgggCCGAGGc -3'
miRNA:   3'- cUC-GUCGGA----UUUUGGCCGag--GGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 16797 0.68 0.739664
Target:  5'- gGGGCGGCCUGc-ACCuGCUCCaCGAc- -3'
miRNA:   3'- -CUCGUCGGAUuuUGGcCGAGG-GCUcc -5'
27122 5' -55.8 NC_005832.1 + 77189 0.68 0.739664
Target:  5'- cGAGguGCCcuucuuuaaUAAGGCUaucggggaGGCgCCCGAGGa -3'
miRNA:   3'- -CUCguCGG---------AUUUUGG--------CCGaGGGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 99603 0.68 0.739664
Target:  5'- gGAGCuGCCcGAAGCgggagaGGCUCCCGucacguacggcGGGa -3'
miRNA:   3'- -CUCGuCGGaUUUUGg-----CCGAGGGC-----------UCC- -5'
27122 5' -55.8 NC_005832.1 + 47711 0.68 0.719453
Target:  5'- uGGCGGCCgcGAGGCCGGC-CaaggaGAGGa -3'
miRNA:   3'- cUCGUCGGa-UUUUGGCCGaGgg---CUCC- -5'
27122 5' -55.8 NC_005832.1 + 9866 0.68 0.719453
Target:  5'- aGGCAGgCUGGAGCUGucuGCUCCCuacgguucuucgGAGGa -3'
miRNA:   3'- cUCGUCgGAUUUUGGC---CGAGGG------------CUCC- -5'
27122 5' -55.8 NC_005832.1 + 90967 0.69 0.678163
Target:  5'- gGAGUGGacuuuaCCUGGAGCCaguuuagguaGGCUCCCGGGu -3'
miRNA:   3'- -CUCGUC------GGAUUUUGG----------CCGAGGGCUCc -5'
27122 5' -55.8 NC_005832.1 + 78808 0.69 0.65724
Target:  5'- uGAGCGGUCUGc-GCCGGCcacUCUGGGGc -3'
miRNA:   3'- -CUCGUCGGAUuuUGGCCGa--GGGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 20830 0.69 0.65724
Target:  5'- aGGGCGGCCUcguACuCuGCUCCCGAuccGGa -3'
miRNA:   3'- -CUCGUCGGAuuuUG-GcCGAGGGCU---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.