miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27138 5' -58.6 NC_005832.1 + 25487 0.66 0.761007
Target:  5'- aUGUaCGUGAGGagaaaguaGCUGGCGauguuaaagGGuACCCCg -3'
miRNA:   3'- -ACGaGCACUCC--------UGGCCGCa--------UC-UGGGG- -5'
27138 5' -58.6 NC_005832.1 + 32160 0.66 0.761007
Target:  5'- gGC-CG-GAGGAgCGGCGaggGGAgUCCa -3'
miRNA:   3'- aCGaGCaCUCCUgGCCGCa--UCUgGGG- -5'
27138 5' -58.6 NC_005832.1 + 7532 0.66 0.757198
Target:  5'- gUGCUCGUucgucagGAGGgaccuccuggaccuGCUGGcCGUcAGACCCa -3'
miRNA:   3'- -ACGAGCA-------CUCC--------------UGGCC-GCA-UCUGGGg -5'
27138 5' -58.6 NC_005832.1 + 55085 0.66 0.741792
Target:  5'- gGC-CGUGAGGaACCGGU--AGGCgUCg -3'
miRNA:   3'- aCGaGCACUCC-UGGCCGcaUCUGgGG- -5'
27138 5' -58.6 NC_005832.1 + 56220 0.66 0.741792
Target:  5'- cGCgUCGU--GGGCCGGUGccggGGACUCUg -3'
miRNA:   3'- aCG-AGCAcuCCUGGCCGCa---UCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 18254 0.66 0.732037
Target:  5'- cGCgaagGUGAGGGCCaGUGgacucagAGACgCCCu -3'
miRNA:   3'- aCGag--CACUCCUGGcCGCa------UCUG-GGG- -5'
27138 5' -58.6 NC_005832.1 + 39442 0.66 0.722196
Target:  5'- gGUcCGUG-GGAgCGGC-UGGGCCUCa -3'
miRNA:   3'- aCGaGCACuCCUgGCCGcAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 42263 0.66 0.722196
Target:  5'- gUGCcCGUG-GGACUGGUcuuuaAGGCCCUu -3'
miRNA:   3'- -ACGaGCACuCCUGGCCGca---UCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 21084 0.66 0.722196
Target:  5'- gGCUgGUGAuuGCCGGggccCGUAGggacGCCCCg -3'
miRNA:   3'- aCGAgCACUccUGGCC----GCAUC----UGGGG- -5'
27138 5' -58.6 NC_005832.1 + 55660 0.66 0.712278
Target:  5'- cUGC-CGUGGGGACUGG----GACUCCu -3'
miRNA:   3'- -ACGaGCACUCCUGGCCgcauCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 23154 0.67 0.702292
Target:  5'- gUGUcCGUGAguGGACaCGGUGacGGAUCCCu -3'
miRNA:   3'- -ACGaGCACU--CCUG-GCCGCa-UCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 10001 0.67 0.702292
Target:  5'- gGCUcaCGUGAGGcuggaCGGCGgaggcGACCCa -3'
miRNA:   3'- aCGA--GCACUCCug---GCCGCau---CUGGGg -5'
27138 5' -58.6 NC_005832.1 + 47055 0.67 0.692247
Target:  5'- cGUUCGaguggGAGGACCacuugaacuGCGUccacGACCCCa -3'
miRNA:   3'- aCGAGCa----CUCCUGGc--------CGCAu---CUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 86440 0.67 0.682152
Target:  5'- aGC-CGccUGAGGagGCUGGUGUGGAgCCUa -3'
miRNA:   3'- aCGaGC--ACUCC--UGGCCGCAUCUgGGG- -5'
27138 5' -58.6 NC_005832.1 + 94557 0.67 0.682152
Target:  5'- cUGUcgUCGUGAGGGgaGGCagguucgugggaGUGGAgCCCa -3'
miRNA:   3'- -ACG--AGCACUCCUggCCG------------CAUCUgGGG- -5'
27138 5' -58.6 NC_005832.1 + 94353 0.67 0.672016
Target:  5'- gGaCUgCGUGAGGACCuuuguuGGCGgaaagaGGGCCUCc -3'
miRNA:   3'- aC-GA-GCACUCCUGG------CCGCa-----UCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 54735 0.67 0.661847
Target:  5'- cGCcugCGaGAGGACCGGCcu-GugCCUg -3'
miRNA:   3'- aCGa--GCaCUCCUGGCCGcauCugGGG- -5'
27138 5' -58.6 NC_005832.1 + 31788 0.67 0.661847
Target:  5'- gGCUaaacaGUGGGGgcaugugaugcuGCCGGgGUAGuCCUCg -3'
miRNA:   3'- aCGAg----CACUCC------------UGGCCgCAUCuGGGG- -5'
27138 5' -58.6 NC_005832.1 + 27207 0.68 0.641448
Target:  5'- cGCUCGUcGAGGAguaCGGagaaGgGGGCUCCg -3'
miRNA:   3'- aCGAGCA-CUCCUg--GCCg---CaUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 14502 0.68 0.641448
Target:  5'- aGC-CGUGuGGACUGcgcaacaaugucGCGUAGGCCUUc -3'
miRNA:   3'- aCGaGCACuCCUGGC------------CGCAUCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.