miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27140 3' -53.6 NC_005832.1 + 105020 0.73 0.573406
Target:  5'- aAGACGCCAUgAGgAggUACCAgGGCAu -3'
miRNA:   3'- gUCUGUGGUG-UCgUuuGUGGUgCCGU- -5'
27140 3' -53.6 NC_005832.1 + 104681 0.66 0.917249
Target:  5'- gAGACGCCGauaaccucaagaccUAGUuccgcGACGCUACGGUAa -3'
miRNA:   3'- gUCUGUGGU--------------GUCGu----UUGUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 103993 0.66 0.893152
Target:  5'- gCGGACGCCGugggGGUAGACAaCAUGGCc -3'
miRNA:   3'- -GUCUGUGGUg---UCGUUUGUgGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 99737 0.67 0.871071
Target:  5'- aAGGCcccCUACAGCAAGucgGCCAUGGCu -3'
miRNA:   3'- gUCUGu--GGUGUCGUUUg--UGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 98518 0.78 0.313148
Target:  5'- aCAGACGCUGCGGCAGACAggUUAgGGCAg -3'
miRNA:   3'- -GUCUGUGGUGUCGUUUGU--GGUgCCGU- -5'
27140 3' -53.6 NC_005832.1 + 97889 0.66 0.924866
Target:  5'- uUAGAguCCAguGaguuUACCACGGCAg -3'
miRNA:   3'- -GUCUguGGUguCguuuGUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 97705 0.72 0.637717
Target:  5'- gGGAUGCCGCGGCcgcCAUCugGGCu -3'
miRNA:   3'- gUCUGUGGUGUCGuuuGUGGugCCGu -5'
27140 3' -53.6 NC_005832.1 + 97242 0.7 0.743403
Target:  5'- aGGGcCACCGCGGCGGccuGCuCCAgGGCGu -3'
miRNA:   3'- gUCU-GUGGUGUCGUU---UGuGGUgCCGU- -5'
27140 3' -53.6 NC_005832.1 + 97138 0.77 0.336404
Target:  5'- aGGGCaaagGCUGCGGCAGACGCCGUGGCAa -3'
miRNA:   3'- gUCUG----UGGUGUCGUUUGUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 97102 0.77 0.36933
Target:  5'- uCAGACGCCcuGgAGCAGGcCGCCGCGGUg -3'
miRNA:   3'- -GUCUGUGG--UgUCGUUU-GUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 96780 0.66 0.912963
Target:  5'- uGGACACaGCAGgAgggggugacAACGuCCACGGCGu -3'
miRNA:   3'- gUCUGUGgUGUCgU---------UUGU-GGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 96732 0.66 0.893152
Target:  5'- uGGcCACCgucuuugagACGGCAGACucUCACGGCGu -3'
miRNA:   3'- gUCuGUGG---------UGUCGUUUGu-GGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 95980 0.69 0.802331
Target:  5'- -uGACGgCGCGGCGAGagucuuuccCGCUGCGGCGg -3'
miRNA:   3'- guCUGUgGUGUCGUUU---------GUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 95353 0.66 0.912963
Target:  5'- aGGACcguaaaGCCGgGGCGGucuggguucuGCGCCACGGaCAa -3'
miRNA:   3'- gUCUG------UGGUgUCGUU----------UGUGGUGCC-GU- -5'
27140 3' -53.6 NC_005832.1 + 94668 0.66 0.912963
Target:  5'- uGGACACCcuguACGGCAccaggAACGCCA-GGUu -3'
miRNA:   3'- gUCUGUGG----UGUCGU-----UUGUGGUgCCGu -5'
27140 3' -53.6 NC_005832.1 + 94184 0.7 0.712345
Target:  5'- aGGGcCGCCACGGCGuGCGCCuauaucuuuccCGGCAu -3'
miRNA:   3'- gUCU-GUGGUGUCGUuUGUGGu----------GCCGU- -5'
27140 3' -53.6 NC_005832.1 + 90243 0.73 0.562802
Target:  5'- aGGGCACCAggaGGUucuuucugagGAACGCCGCGGCc -3'
miRNA:   3'- gUCUGUGGUg--UCG----------UUUGUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 90078 0.68 0.846864
Target:  5'- cCGGAUuuccucCCACAaaGAugGCCGCGGCGu -3'
miRNA:   3'- -GUCUGu-----GGUGUcgUUugUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 85551 0.68 0.841783
Target:  5'- gCAGACGgCAUAGCucACauuauuccaaccaccGCCACGGUg -3'
miRNA:   3'- -GUCUGUgGUGUCGuuUG---------------UGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 82177 0.67 0.855158
Target:  5'- gAGGCGCgAC-GCAuACgugugccccuuuGCCACGGCAg -3'
miRNA:   3'- gUCUGUGgUGuCGUuUG------------UGGUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.