miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27140 3' -53.6 NC_005832.1 + 98518 0.78 0.313148
Target:  5'- aCAGACGCUGCGGCAGACAggUUAgGGCAg -3'
miRNA:   3'- -GUCUGUGGUGUCGUUUGU--GGUgCCGU- -5'
27140 3' -53.6 NC_005832.1 + 69166 0.69 0.795729
Target:  5'- aCGGACGCCACAGUcuuauagucccuuacCACUACGGgGa -3'
miRNA:   3'- -GUCUGUGGUGUCGuuu------------GUGGUGCCgU- -5'
27140 3' -53.6 NC_005832.1 + 2405 0.69 0.802331
Target:  5'- gAGACGgC-CAGC-AACGCCACcgGGCAa -3'
miRNA:   3'- gUCUGUgGuGUCGuUUGUGGUG--CCGU- -5'
27140 3' -53.6 NC_005832.1 + 30184 0.66 0.924866
Target:  5'- gCGGGCuCCGCAG-GAAUACCuguaACGGCu -3'
miRNA:   3'- -GUCUGuGGUGUCgUUUGUGG----UGCCGu -5'
27140 3' -53.6 NC_005832.1 + 1016 0.72 0.602245
Target:  5'- cCGGGgGCUGCAGCGccuucacacccaggGGCACCuGCGGCAa -3'
miRNA:   3'- -GUCUgUGGUGUCGU--------------UUGUGG-UGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 1717 0.72 0.608684
Target:  5'- gCAGGCccucaugGCCACAGCcgucaugcacggcgaGAugGCCAUGGCGc -3'
miRNA:   3'- -GUCUG-------UGGUGUCG---------------UUugUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 97705 0.72 0.637717
Target:  5'- gGGAUGCCGCGGCcgcCAUCugGGCu -3'
miRNA:   3'- gUCUGUGGUGUCGuuuGUGGugCCGu -5'
27140 3' -53.6 NC_005832.1 + 75895 0.71 0.669925
Target:  5'- uGGACcucucgcCCGCAGCGGACcUCACGGCc -3'
miRNA:   3'- gUCUGu------GGUGUCGUUUGuGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 97242 0.7 0.743403
Target:  5'- aGGGcCACCGCGGCGGccuGCuCCAgGGCGu -3'
miRNA:   3'- gUCU-GUGGUGUCGUU---UGuGGUgCCGU- -5'
27140 3' -53.6 NC_005832.1 + 67180 0.69 0.78326
Target:  5'- uCAGGCcucuuuacgcCCGCGGCccuCGCCACGGCc -3'
miRNA:   3'- -GUCUGu---------GGUGUCGuuuGUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 67580 0.69 0.773494
Target:  5'- gAGACuuCCACAGCcucuugagguGAGCcgccGCCGCGGCc -3'
miRNA:   3'- gUCUGu-GGUGUCG----------UUUG----UGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 66392 0.7 0.712345
Target:  5'- uCAGACACCAgGGaCGGAgACgGgGGCAu -3'
miRNA:   3'- -GUCUGUGGUgUC-GUUUgUGgUgCCGU- -5'
27140 3' -53.6 NC_005832.1 + 9416 0.75 0.432036
Target:  5'- aCAGACAcCCGCAuaGGAUACUACGGCc -3'
miRNA:   3'- -GUCUGU-GGUGUcgUUUGUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 65626 0.69 0.773494
Target:  5'- -uGGgACCGgAGCAcaugGACACCACGGgGa -3'
miRNA:   3'- guCUgUGGUgUCGU----UUGUGGUGCCgU- -5'
27140 3' -53.6 NC_005832.1 + 1339 0.74 0.490438
Target:  5'- gCAGACugCACcGCGGAgguCGCCAUGGCc -3'
miRNA:   3'- -GUCUGugGUGuCGUUU---GUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 94184 0.7 0.712345
Target:  5'- aGGGcCGCCACGGCGuGCGCCuauaucuuuccCGGCAu -3'
miRNA:   3'- gUCU-GUGGUGUCGUuUGUGGu----------GCCGU- -5'
27140 3' -53.6 NC_005832.1 + 43347 0.69 0.78326
Target:  5'- gCGGACcCCGCAGCGccggaccACGCCAgccUGGCGg -3'
miRNA:   3'- -GUCUGuGGUGUCGUu------UGUGGU---GCCGU- -5'
27140 3' -53.6 NC_005832.1 + 68726 0.69 0.799511
Target:  5'- aAGGC-CCGCGGCGcACACugcauccgucaccgCACGGCGu -3'
miRNA:   3'- gUCUGuGGUGUCGUuUGUG--------------GUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 90243 0.73 0.562802
Target:  5'- aGGGCACCAggaGGUucuuucugagGAACGCCGCGGCc -3'
miRNA:   3'- gUCUGUGGUg--UCG----------UUUGUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 71395 0.72 0.616204
Target:  5'- -cGACauugGCCAC-GCAGACACCgccGCGGCGu -3'
miRNA:   3'- guCUG----UGGUGuCGUUUGUGG---UGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.