miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27162 3' -57.9 NC_005832.1 + 104098 0.7 0.510066
Target:  5'- gGCGGCCCUCaggGCCACCaucuccucGGGagcuuCGCa -3'
miRNA:   3'- -CGCCGGGAG---CGGUGGaauu----UCCg----GCG- -5'
27162 3' -57.9 NC_005832.1 + 103974 0.72 0.416556
Target:  5'- gGUGGCCCUgaggGCCGCCgcGGAcGCCGUg -3'
miRNA:   3'- -CGCCGGGAg---CGGUGGaaUUUcCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 102370 0.69 0.549906
Target:  5'- gGCGGUCgUaGCCAU---GGAGGCCGCc -3'
miRNA:   3'- -CGCCGGgAgCGGUGgaaUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 102077 0.69 0.570191
Target:  5'- aCGGUaacaC-CGuCCGCCaUGGAGGCCGCc -3'
miRNA:   3'- cGCCGg---GaGC-GGUGGaAUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 100773 0.66 0.760116
Target:  5'- -aGGCCauaacCGCCaACCUUuuugcggcuaugggAGAGGCCGg -3'
miRNA:   3'- cgCCGGga---GCGG-UGGAA--------------UUUCCGGCg -5'
27162 3' -57.9 NC_005832.1 + 98595 0.67 0.70372
Target:  5'- aCGGCCCUgUGCCuGCCUaucauGGGagaCGCg -3'
miRNA:   3'- cGCCGGGA-GCGG-UGGAauu--UCCg--GCG- -5'
27162 3' -57.9 NC_005832.1 + 97438 0.66 0.74361
Target:  5'- aCGGCgCUgGCCACCUUcaacGAGGacaaGCu -3'
miRNA:   3'- cGCCGgGAgCGGUGGAAu---UUCCgg--CG- -5'
27162 3' -57.9 NC_005832.1 + 97255 0.66 0.772517
Target:  5'- aGCcuuuGCCCUCaggGCCACCgcggcGGCCuGCu -3'
miRNA:   3'- -CGc---CGGGAG---CGGUGGaauuuCCGG-CG- -5'
27162 3' -57.9 NC_005832.1 + 97088 0.67 0.683368
Target:  5'- -aGGCCCUgucgaccucagaCGCC-CUggAGcAGGCCGCc -3'
miRNA:   3'- cgCCGGGA------------GCGGuGGaaUU-UCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 96597 0.68 0.65254
Target:  5'- -aGGCUCUUGagaaCCGCCUUGGA-GUCGCa -3'
miRNA:   3'- cgCCGGGAGC----GGUGGAAUUUcCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 96153 0.7 0.539846
Target:  5'- gGUGGCacaUUGCCACCagGGuGGCCGUc -3'
miRNA:   3'- -CGCCGgg-AGCGGUGGaaUUuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 95797 0.75 0.290931
Target:  5'- gGCuGCCCUCgGCUugCUgcccuGGCCGCg -3'
miRNA:   3'- -CGcCGGGAG-CGGugGAauuu-CCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 95588 0.67 0.683368
Target:  5'- -gGGCCCUCGagagggagugCGCCgacuacgGGAGGCUGUc -3'
miRNA:   3'- cgCCGGGAGCg---------GUGGaa-----UUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 94986 0.69 0.560023
Target:  5'- -aGGUCacaaagUGCUACCUccaggcuaUGGAGGCCGCa -3'
miRNA:   3'- cgCCGGga----GCGGUGGA--------AUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 94897 0.74 0.297839
Target:  5'- uCGGCCCUCGCgCAgauCCUccuGGGCCuGCa -3'
miRNA:   3'- cGCCGGGAGCG-GU---GGAauuUCCGG-CG- -5'
27162 3' -57.9 NC_005832.1 + 94210 0.66 0.772517
Target:  5'- -aGGCCCUCuuuCCGCCaacAAAGGUccucaCGCa -3'
miRNA:   3'- cgCCGGGAGc--GGUGGaa-UUUCCG-----GCG- -5'
27162 3' -57.9 NC_005832.1 + 87570 0.75 0.257026
Target:  5'- uCGGCCUUUGCCGCCggguccauGGCCaGCa -3'
miRNA:   3'- cGCCGGGAGCGGUGGaauuu---CCGG-CG- -5'
27162 3' -57.9 NC_005832.1 + 87304 0.67 0.673123
Target:  5'- aGCcGCCgUCGCCAUCcccGAGGCCcCa -3'
miRNA:   3'- -CGcCGGgAGCGGUGGaauUUCCGGcG- -5'
27162 3' -57.9 NC_005832.1 + 83393 0.73 0.365718
Target:  5'- uUGGCCC-CGCCACCUcAAGGGUa-- -3'
miRNA:   3'- cGCCGGGaGCGGUGGAaUUUCCGgcg -5'
27162 3' -57.9 NC_005832.1 + 81275 0.67 0.683368
Target:  5'- uGCGGCUUUCGCaGCCcucacuuGGGCCa- -3'
miRNA:   3'- -CGCCGGGAGCGgUGGaauu---UCCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.