miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27162 3' -57.9 NC_005832.1 + 67163 0.85 0.061776
Target:  5'- cGCGGCCCUCGCCAC------GGCCGCc -3'
miRNA:   3'- -CGCCGGGAGCGGUGgaauuuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 2267 0.69 0.580404
Target:  5'- -aGGgCCUCGCCGaauaUGGGGGCCaGCa -3'
miRNA:   3'- cgCCgGGAGCGGUgga-AUUUCCGG-CG- -5'
27162 3' -57.9 NC_005832.1 + 26645 0.68 0.611241
Target:  5'- -aGGUCUUUuCCAUCaaGAGGGCCGCa -3'
miRNA:   3'- cgCCGGGAGcGGUGGaaUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 97255 0.66 0.772517
Target:  5'- aGCcuuuGCCCUCaggGCCACCgcggcGGCCuGCu -3'
miRNA:   3'- -CGc---CGGGAG---CGGUGGaauuuCCGG-CG- -5'
27162 3' -57.9 NC_005832.1 + 13771 0.75 0.276833
Target:  5'- gGCGGCCUcccugcaCGCCGCCUcucccuugcucucUGAGGGuuGCu -3'
miRNA:   3'- -CGCCGGGa------GCGGUGGA-------------AUUUCCggCG- -5'
27162 3' -57.9 NC_005832.1 + 94897 0.74 0.297839
Target:  5'- uCGGCCCUCGCgCAgauCCUccuGGGCCuGCa -3'
miRNA:   3'- cGCCGGGAGCG-GU---GGAauuUCCGG-CG- -5'
27162 3' -57.9 NC_005832.1 + 26611 0.73 0.373888
Target:  5'- cGCGGCCUUUaagguggcgaggGCCGCCgggu-GGCUGCc -3'
miRNA:   3'- -CGCCGGGAG------------CGGUGGaauuuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 28066 0.73 0.382182
Target:  5'- gGCGGgacCCUUUGCCACCUUGAccaCCGCg -3'
miRNA:   3'- -CGCC---GGGAGCGGUGGAAUUuccGGCG- -5'
27162 3' -57.9 NC_005832.1 + 1031 0.71 0.480995
Target:  5'- cCGGCCCcUGCUacGCCg--GGGGCUGCa -3'
miRNA:   3'- cGCCGGGaGCGG--UGGaauUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 72843 0.69 0.570191
Target:  5'- aCGGCCCguccgCGCC-CCUaucuccggGAGGGCCu- -3'
miRNA:   3'- cGCCGGGa----GCGGuGGAa-------UUUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 104098 0.7 0.510066
Target:  5'- gGCGGCCCUCaggGCCACCaucuccucGGGagcuuCGCa -3'
miRNA:   3'- -CGCCGGGAG---CGGUGGaauu----UCCg----GCG- -5'
27162 3' -57.9 NC_005832.1 + 78577 0.71 0.480995
Target:  5'- uCGGUCgC-CGCCGCCUUuGAGGCaUGCu -3'
miRNA:   3'- cGCCGG-GaGCGGUGGAAuUUCCG-GCG- -5'
27162 3' -57.9 NC_005832.1 + 36647 0.8 0.127247
Target:  5'- cCGGCCCUggcguaCGCCGCCUccguGGCCGCc -3'
miRNA:   3'- cGCCGGGA------GCGGUGGAauuuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 8275 0.7 0.523883
Target:  5'- cCGGCUCcCGUCAggauaucuagggacuCCUcGAAGGCCGCc -3'
miRNA:   3'- cGCCGGGaGCGGU---------------GGAaUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 87570 0.75 0.257026
Target:  5'- uCGGCCUUUGCCGCCggguccauGGCCaGCa -3'
miRNA:   3'- cGCCGGGAGCGGUGGaauuu---CCGG-CG- -5'
27162 3' -57.9 NC_005832.1 + 72423 0.72 0.416556
Target:  5'- uGCGGCCCcuggUCGCC-CCU---GGGCCc- -3'
miRNA:   3'- -CGCCGGG----AGCGGuGGAauuUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 94986 0.69 0.560023
Target:  5'- -aGGUCacaaagUGCUACCUccaggcuaUGGAGGCCGCa -3'
miRNA:   3'- cgCCGGga----GCGGUGGA--------AUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 53057 0.69 0.589628
Target:  5'- uGCGGCCUagagauggUCGCCGgcaggauCC-UGAGGGCCa- -3'
miRNA:   3'- -CGCCGGG--------AGCGGU-------GGaAUUUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 31535 0.75 0.263285
Target:  5'- uGUGGCCCagugCGCCACCgcucaguguagAGAGGCgGUg -3'
miRNA:   3'- -CGCCGGGa---GCGGUGGaa---------UUUCCGgCG- -5'
27162 3' -57.9 NC_005832.1 + 83393 0.73 0.365718
Target:  5'- uUGGCCC-CGCCACCUcAAGGGUa-- -3'
miRNA:   3'- cGCCGGGaGCGGUGGAaUUUCCGgcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.