Results 1 - 20 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 68173 | 0.65 | 0.966658 |
Target: 5'- --aUGGCCguuguucccgagcaCUCUcuGUGGAAGAGGCCu -3' miRNA: 3'- aacGCCGG--------------GAGAacUACCUUUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 35925 | 0.66 | 0.963166 |
Target: 5'- aUUGCGGUCCUCa-GcgGGAcAaucaugggcaggucGGACCa -3' miRNA: 3'- -AACGCCGGGAGaaCuaCCUuU--------------UCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 67447 | 0.66 | 0.960575 |
Target: 5'- -aGCGGUCUUgagGAcGGAAGAGACa -3' miRNA: 3'- aaCGCCGGGAgaaCUaCCUUUUCUGg -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 53773 | 0.66 | 0.959812 |
Target: 5'- -aGCGGaccuguuuaCCCUCgcgcccggGGGAAAGGCCu -3' miRNA: 3'- aaCGCC---------GGGAGaacua---CCUUUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 20177 | 0.66 | 0.95666 |
Target: 5'- -gGCauGGCCCUCaUGAUGGu---GGCg -3' miRNA: 3'- aaCG--CCGGGAGaACUACCuuuuCUGg -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 55180 | 0.66 | 0.95666 |
Target: 5'- --cCGGCCCUaacagaGAUGGAGAGGcauCCu -3' miRNA: 3'- aacGCCGGGAgaa---CUACCUUUUCu--GG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 90212 | 0.66 | 0.956254 |
Target: 5'- -cGCGGCCaUCUUuGUGGGAGgaaauccGGACa -3' miRNA: 3'- aaCGCCGGgAGAAcUACCUUU-------UCUGg -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 39676 | 0.66 | 0.955435 |
Target: 5'- cUGCGGCuccCCUCgacucguccaaGGUGGGuccugugGGAGACCa -3' miRNA: 3'- aACGCCG---GGAGaa---------CUACCU-------UUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 102880 | 0.67 | 0.943354 |
Target: 5'- -gGCGGCCCUCaucuacAUGGGcuacAGGACUu -3' miRNA: 3'- aaCGCCGGGAGaac---UACCUu---UUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 95033 | 0.67 | 0.943354 |
Target: 5'- -aGgGGCCugcgaCUCUUGcAacccacagcuccUGGAAAAGGCCg -3' miRNA: 3'- aaCgCCGG-----GAGAAC-U------------ACCUUUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 42649 | 0.67 | 0.943354 |
Target: 5'- gUUGCGGUCCUCUUccac--AGAGGCCc -3' miRNA: 3'- -AACGCCGGGAGAAcuaccuUUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 43550 | 0.67 | 0.943354 |
Target: 5'- cUGUGuGCUCUCUUGGggacGGAGAGuacgccGACCc -3' miRNA: 3'- aACGC-CGGGAGAACUa---CCUUUU------CUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 36600 | 0.67 | 0.938385 |
Target: 5'- -gGCgGGCCCccacggCUgcaGGUGcGGAAAGGCCa -3' miRNA: 3'- aaCG-CCGGGa-----GAa--CUAC-CUUUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 36242 | 0.67 | 0.937873 |
Target: 5'- -cGCGGaCCUUgaGGccguacuUGGAGAGGACCc -3' miRNA: 3'- aaCGCCgGGAGaaCU-------ACCUUUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 96502 | 0.67 | 0.936842 |
Target: 5'- -gGCGGCCgacagggcgcugagCUCUccucgGAgugcGGAAAGGGCCu -3' miRNA: 3'- aaCGCCGG--------------GAGAa----CUa---CCUUUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 42517 | 0.67 | 0.933146 |
Target: 5'- --uCGGgCCUCU--GUGGAAGAGgACCg -3' miRNA: 3'- aacGCCgGGAGAacUACCUUUUC-UGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 75721 | 0.67 | 0.933146 |
Target: 5'- cUGCGGUCCugUCUgcgGccGUGGGGAGGugUa -3' miRNA: 3'- aACGCCGGG--AGAa--C--UACCUUUUCugG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 1179 | 0.67 | 0.927634 |
Target: 5'- cUGCGGUCUUUgacaGAgGcGAGAAGGCCa -3' miRNA: 3'- aACGCCGGGAGaa--CUaC-CUUUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 42385 | 0.67 | 0.927634 |
Target: 5'- -gGCGGCCCUCcucAUGGAGcAGcACg -3' miRNA: 3'- aaCGCCGGGAGaacUACCUUuUC-UGg -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 31536 | 0.67 | 0.923614 |
Target: 5'- aUGUGGCCCagugcgccaccgcUCaguguagagaggcGGUGGGGAGGACCu -3' miRNA: 3'- aACGCCGGG-------------AGaa-----------CUACCUUUUCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home