miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27162 5' -51.7 NC_005832.1 + 102880 0.67 0.943354
Target:  5'- -gGCGGCCCUCaucuacAUGGGcuacAGGACUu -3'
miRNA:   3'- aaCGCCGGGAGaac---UACCUu---UUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 100753 0.69 0.881491
Target:  5'- uUUGCGGCU------AUGGGAGAGGCCg -3'
miRNA:   3'- -AACGCCGGgagaacUACCUUUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 96502 0.67 0.936842
Target:  5'- -gGCGGCCgacagggcgcugagCUCUccucgGAgugcGGAAAGGGCCu -3'
miRNA:   3'- aaCGCCGG--------------GAGAa----CUa---CCUUUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 95823 0.68 0.915793
Target:  5'- -cGCGGCCgCUCccUUGAccgccgcagcGGGAAAGACUc -3'
miRNA:   3'- aaCGCCGG-GAG--AACUa---------CCUUUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 95033 0.67 0.943354
Target:  5'- -aGgGGCCugcgaCUCUUGcAacccacagcuccUGGAAAAGGCCg -3'
miRNA:   3'- aaCgCCGG-----GAGAAC-U------------ACCUUUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 90212 0.66 0.956254
Target:  5'- -cGCGGCCaUCUUuGUGGGAGgaaauccGGACa -3'
miRNA:   3'- aaCGCCGGgAGAAcUACCUUU-------UCUGg -5'
27162 5' -51.7 NC_005832.1 + 90006 0.69 0.857844
Target:  5'- -gGUGGgCCg--UGAUGGAGGAGcCCa -3'
miRNA:   3'- aaCGCCgGGagaACUACCUUUUCuGG- -5'
27162 5' -51.7 NC_005832.1 + 75721 0.67 0.933146
Target:  5'- cUGCGGUCCugUCUgcgGccGUGGGGAGGugUa -3'
miRNA:   3'- aACGCCGGG--AGAa--C--UACCUUUUCugG- -5'
27162 5' -51.7 NC_005832.1 + 72070 0.72 0.723846
Target:  5'- -gGCGGCCgUCgUGGUGGGaguGAGGAUg -3'
miRNA:   3'- aaCGCCGGgAGaACUACCU---UUUCUGg -5'
27162 5' -51.7 NC_005832.1 + 68173 0.65 0.966658
Target:  5'- --aUGGCCguuguucccgagcaCUCUcuGUGGAAGAGGCCu -3'
miRNA:   3'- aacGCCGG--------------GAGAacUACCUUUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 67447 0.66 0.960575
Target:  5'- -aGCGGUCUUgagGAcGGAAGAGACa -3'
miRNA:   3'- aaCGCCGGGAgaaCUaCCUUUUCUGg -5'
27162 5' -51.7 NC_005832.1 + 66401 0.68 0.902867
Target:  5'- -gGCGGCCUccCUggGAUGGGAcuuggGAGACg -3'
miRNA:   3'- aaCGCCGGGa-GAa-CUACCUU-----UUCUGg -5'
27162 5' -51.7 NC_005832.1 + 55180 0.66 0.95666
Target:  5'- --cCGGCCCUaacagaGAUGGAGAGGcauCCu -3'
miRNA:   3'- aacGCCGGGAgaa---CUACCUUUUCu--GG- -5'
27162 5' -51.7 NC_005832.1 + 54639 0.7 0.804501
Target:  5'- -gGCGGCgucCCUCUUGGgguucucGGAcuGGGCCu -3'
miRNA:   3'- aaCGCCG---GGAGAACUa------CCUuuUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 53773 0.66 0.959812
Target:  5'- -aGCGGaccuguuuaCCCUCgcgcccggGGGAAAGGCCu -3'
miRNA:   3'- aaCGCC---------GGGAGaacua---CCUUUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 53613 0.7 0.840904
Target:  5'- -gGCGaguauacuCCCgUCUUGGUGGAaGAAGGCCg -3'
miRNA:   3'- aaCGCc-------GGG-AGAACUACCU-UUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 52178 0.75 0.572067
Target:  5'- ---aGGCCCUCUUGAcguagGGucuGGGGACCa -3'
miRNA:   3'- aacgCCGGGAGAACUa----CCu--UUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 46197 0.69 0.873854
Target:  5'- -gGCucaGGCCCUCcUGGaGGAcAGGGACCc -3'
miRNA:   3'- aaCG---CCGGGAGaACUaCCU-UUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 43550 0.67 0.943354
Target:  5'- cUGUGuGCUCUCUUGGggacGGAGAGuacgccGACCc -3'
miRNA:   3'- aACGC-CGGGAGAACUa---CCUUUU------CUGG- -5'
27162 5' -51.7 NC_005832.1 + 42649 0.67 0.943354
Target:  5'- gUUGCGGUCCUCUUccac--AGAGGCCc -3'
miRNA:   3'- -AACGCCGGGAGAAcuaccuUUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.