Results 1 - 20 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 10042 | 0.76 | 0.22407 |
Target: 5'- cCCCUGcccgcuucgucGGGCgcGUCggCCGCGGAGGCCg -3' miRNA: 3'- -GGGAC-----------UCCGa-CAGagGGUGUCUCCGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 47918 | 0.68 | 0.579081 |
Target: 5'- aCCCcGAGGCggagGUCcuggCCgAgAGGGGCUa -3' miRNA: 3'- -GGGaCUCCGa---CAGa---GGgUgUCUCCGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 9712 | 0.68 | 0.579081 |
Target: 5'- cUCCUGAcGG-UGUCUCCCGUGGAGaCCa -3' miRNA: 3'- -GGGACU-CCgACAGAGGGUGUCUCcGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 20486 | 0.66 | 0.750956 |
Target: 5'- cCCUUGAuGCUGUaaCCCGCcacccaAGGGGCg -3' miRNA: 3'- -GGGACUcCGACAgaGGGUG------UCUCCGg -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 95568 | 0.74 | 0.298487 |
Target: 5'- gCCgacuacggGAGGCUGUCUCCgaUACGGucGCCg -3' miRNA: 3'- gGGa-------CUCCGACAGAGG--GUGUCucCGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 103783 | 0.73 | 0.350097 |
Target: 5'- uCUCUGuGGUUGacggCUCCCGacuguauguCGGAGGCCa -3' miRNA: 3'- -GGGACuCCGACa---GAGGGU---------GUCUCCGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 100394 | 0.72 | 0.382319 |
Target: 5'- aCCCauaaaggaaaUGAGGCUGUCUgaCCu--GAGGCCc -3' miRNA: 3'- -GGG----------ACUCCGACAGAg-GGuguCUCCGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 5260 | 0.72 | 0.390677 |
Target: 5'- aCgCUGAGGUUGUCgUCCUGCAuGGcGCCg -3' miRNA: 3'- -GgGACUCCGACAG-AGGGUGUcUC-CGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 78956 | 0.69 | 0.538828 |
Target: 5'- aCCCUGAGGCacGUCgaagguaaUCaCCGCGGgguAGGUCa -3' miRNA: 3'- -GGGACUCCGa-CAG--------AG-GGUGUC---UCCGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 85778 | 0.68 | 0.579081 |
Target: 5'- aCUCUGAGGCUGaagCcCCCGCAccuGCCa -3' miRNA: 3'- -GGGACUCCGACa--GaGGGUGUcucCGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 39700 | 0.69 | 0.567933 |
Target: 5'- cCCCUG-GGUccugccgguuccaUGUCUCCCACu--GGUCc -3' miRNA: 3'- -GGGACuCCG-------------ACAGAGGGUGucuCCGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 17034 | 0.71 | 0.452391 |
Target: 5'- aCCUcGAGGgagGUCUCCCcgACAcugucGAGGCCa -3' miRNA: 3'- gGGA-CUCCga-CAGAGGG--UGU-----CUCCGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 652 | 0.75 | 0.24755 |
Target: 5'- cCCCgccgGGGGCUGgugcagaaagugguaCUcggCCCACAGGGGCCc -3' miRNA: 3'- -GGGa---CUCCGACa--------------GA---GGGUGUCUCCGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 79866 | 0.69 | 0.568944 |
Target: 5'- uUCCUGAGGaagaUGagggCUCCCucugGCAGGGGUUc -3' miRNA: 3'- -GGGACUCCg---ACa---GAGGG----UGUCUCCGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 39575 | 0.75 | 0.252362 |
Target: 5'- cCCCUGAGGCccagccgCUCCCACGGAcccgaccGGaCCg -3' miRNA: 3'- -GGGACUCCGaca----GAGGGUGUCU-------CC-GG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 92532 | 0.71 | 0.416455 |
Target: 5'- gCUCUG-GGCUGcCUCCUccucGCGGGGuGCCu -3' miRNA: 3'- -GGGACuCCGACaGAGGG----UGUCUC-CGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 73129 | 0.69 | 0.568944 |
Target: 5'- cCUUUGGGGCcucUGUCuccccuuuUCCCAUuGGGGCCc -3' miRNA: 3'- -GGGACUCCG---ACAG--------AGGGUGuCUCCGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 36424 | 0.68 | 0.579081 |
Target: 5'- uUCCgaggGAGaGCUGgcgUCCauaguCGCAGAGGCCg -3' miRNA: 3'- -GGGa---CUC-CGACag-AGG-----GUGUCUCCGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 42658 | 0.75 | 0.27174 |
Target: 5'- gCCCUuGGaGUUGcgguccUCUUCCACAGAGGCCc -3' miRNA: 3'- -GGGAcUC-CGAC------AGAGGGUGUCUCCGG- -5' |
|||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 58533 | 0.72 | 0.38149 |
Target: 5'- aCCCUuGGGCcacaguuUGUCUCCUagccuccuagugACAGAGGCg -3' miRNA: 3'- -GGGAcUCCG-------ACAGAGGG------------UGUCUCCGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home