miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27180 3' -56.5 NC_005832.1 + 84585 0.66 0.841803
Target:  5'- cUCCCAGGcGUCCugccguaaaacGGAgGGUgaacgUAGUCa -3'
miRNA:   3'- cAGGGUCCcCAGG-----------UCUgCCAa----AUCGG- -5'
27180 3' -56.5 NC_005832.1 + 2432 0.66 0.83344
Target:  5'- uGUCCCAucauGGUCCuGACGGcgUUggagacGGCCa -3'
miRNA:   3'- -CAGGGUcc--CCAGGuCUGCCa-AA------UCGG- -5'
27180 3' -56.5 NC_005832.1 + 55624 0.66 0.83344
Target:  5'- gGUCuCCGGcGGUggGGACGGUUUuccGGCCc -3'
miRNA:   3'- -CAG-GGUCcCCAggUCUGCCAAA---UCGG- -5'
27180 3' -56.5 NC_005832.1 + 72257 0.66 0.824886
Target:  5'- gGUCUCAaGGGUCUAaACGGUccGGUCg -3'
miRNA:   3'- -CAGGGUcCCCAGGUcUGCCAaaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 62319 0.66 0.824886
Target:  5'- cGUCCUGGugguaGGGUgcaCAGACGGUUacccauagagGGCCa -3'
miRNA:   3'- -CAGGGUC-----CCCAg--GUCUGCCAAa---------UCGG- -5'
27180 3' -56.5 NC_005832.1 + 39534 0.66 0.824886
Target:  5'- uGUCaCCGGauggaccaaaGGGUCCAucUGGUUcGGCCg -3'
miRNA:   3'- -CAG-GGUC----------CCCAGGUcuGCCAAaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 45965 0.66 0.81615
Target:  5'- -aCCgaCGGGGGUCCAGAguacaUGGCCg -3'
miRNA:   3'- caGG--GUCCCCAGGUCUgccaaAUCGG- -5'
27180 3' -56.5 NC_005832.1 + 39703 0.66 0.815267
Target:  5'- gGUCCCcuGGGUCCuGcCGGUUccaugucucccacUGGUCc -3'
miRNA:   3'- -CAGGGucCCCAGGuCuGCCAA-------------AUCGG- -5'
27180 3' -56.5 NC_005832.1 + 31445 0.66 0.807241
Target:  5'- --gUCAGGGGcuucaUCUAGACGGgccacacGGCCg -3'
miRNA:   3'- cagGGUCCCC-----AGGUCUGCCaaa----UCGG- -5'
27180 3' -56.5 NC_005832.1 + 72863 0.66 0.798168
Target:  5'- -cCUCAGGGc-CCAGACGGUgcaaagGGUCc -3'
miRNA:   3'- caGGGUCCCcaGGUCUGCCAaa----UCGG- -5'
27180 3' -56.5 NC_005832.1 + 55170 0.66 0.798168
Target:  5'- aUCCCAGGGccaCAGA-GGU--GGCCa -3'
miRNA:   3'- cAGGGUCCCcagGUCUgCCAaaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 49512 0.66 0.798168
Target:  5'- gGUCCgAGGaGGU-CAGGCGGgacaUGGCg -3'
miRNA:   3'- -CAGGgUCC-CCAgGUCUGCCaa--AUCGg -5'
27180 3' -56.5 NC_005832.1 + 54634 0.66 0.798168
Target:  5'- cGUCCCucuuGGGGUUCu--CGGacugGGCCu -3'
miRNA:   3'- -CAGGGu---CCCCAGGucuGCCaaa-UCGG- -5'
27180 3' -56.5 NC_005832.1 + 66082 0.67 0.788007
Target:  5'- aUCCCAGGgacaGGUCCcuagccagccuaaAGGCGGg--AGCg -3'
miRNA:   3'- cAGGGUCC----CCAGG-------------UCUGCCaaaUCGg -5'
27180 3' -56.5 NC_005832.1 + 42041 0.67 0.770049
Target:  5'- -cCCCuuGGGGUCCGuGACuGUUaGGUCg -3'
miRNA:   3'- caGGGu-CCCCAGGU-CUGcCAAaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 72293 0.67 0.770049
Target:  5'- gGUCCCAGGGGcgaCCAGG------GGCCg -3'
miRNA:   3'- -CAGGGUCCCCa--GGUCUgccaaaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 12987 0.67 0.747701
Target:  5'- cGUCUCGggguccgucaggcuGGGGUCCAGGCcccuGGUcuugacgAGCCu -3'
miRNA:   3'- -CAGGGU--------------CCCCAGGUCUG----CCAaa-----UCGG- -5'
27180 3' -56.5 NC_005832.1 + 23091 0.67 0.740784
Target:  5'- uUCUCAGGGGUCUGGaggcuGCGGggUAcgaggugguGCCc -3'
miRNA:   3'- cAGGGUCCCCAGGUC-----UGCCaaAU---------CGG- -5'
27180 3' -56.5 NC_005832.1 + 97294 0.68 0.720766
Target:  5'- -gUCCAGGGaGUCCAGGCucUUU-GCCa -3'
miRNA:   3'- caGGGUCCC-CAGGUCUGccAAAuCGG- -5'
27180 3' -56.5 NC_005832.1 + 71092 0.68 0.710633
Target:  5'- aUCCaCAGGGc-CCAGAUGGUccuGCCu -3'
miRNA:   3'- cAGG-GUCCCcaGGUCUGCCAaauCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.