Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2721 | 5' | -49.5 | NC_001491.2 | + | 49232 | 0.66 | 0.997524 |
Target: 5'- aUAAUcUGCuAUCCACugUggGGAAAGCc -3' miRNA: 3'- -AUUGcACG-UAGGUGugGugCCUUUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 147603 | 0.66 | 0.997389 |
Target: 5'- -cGCGUcGCugggCCGCGgaguguggcagucuCCGCGGGGAACg -3' miRNA: 3'- auUGCA-CGua--GGUGU--------------GGUGCCUUUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 118868 | 0.66 | 0.997053 |
Target: 5'- gGGCGUGguUaCCAC-CCaaGCGGggGAg -3' miRNA: 3'- aUUGCACguA-GGUGuGG--UGCCuuUUg -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 11907 | 0.66 | 0.997053 |
Target: 5'- aAGCG-GUacaAUUCGCACCugGGAucAACa -3' miRNA: 3'- aUUGCaCG---UAGGUGUGGugCCUu-UUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 118243 | 0.66 | 0.997053 |
Target: 5'- gAACG-GUcgCCGgGCCACGGGc--- -3' miRNA: 3'- aUUGCaCGuaGGUgUGGUGCCUuuug -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 79692 | 0.66 | 0.997053 |
Target: 5'- gAACGUGCGUUCGCuaccgugaaucACCGCcucGAGGAUg -3' miRNA: 3'- aUUGCACGUAGGUG-----------UGGUGc--CUUUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 65312 | 0.66 | 0.996509 |
Target: 5'- ---aGUGCGUCCACcgGCCugGaGuuuGGGCg -3' miRNA: 3'- auugCACGUAGGUG--UGGugC-Cu--UUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 69457 | 0.66 | 0.996509 |
Target: 5'- --cCGUGCuAUCCuGCACCauaucacguuugGCGGAAuACg -3' miRNA: 3'- auuGCACG-UAGG-UGUGG------------UGCCUUuUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 97687 | 0.66 | 0.996509 |
Target: 5'- aAGCGUGCAgagUCugGCCcugGCGaGAGACg -3' miRNA: 3'- aUUGCACGUa--GGugUGG---UGCcUUUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 116181 | 0.66 | 0.995683 |
Target: 5'- cGGCG-GCGagcccuucuccggcUCCGCgGCCGCGGAGGGg -3' miRNA: 3'- aUUGCaCGU--------------AGGUG-UGGUGCCUUUUg -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 125472 | 0.66 | 0.995175 |
Target: 5'- gGGCGcccGCcgCC-CGCCggGCGGGAGACg -3' miRNA: 3'- aUUGCa--CGuaGGuGUGG--UGCCUUUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 43247 | 0.67 | 0.994367 |
Target: 5'- ----cUGgGUCCAcCGCCACGGAAGu- -3' miRNA: 3'- auugcACgUAGGU-GUGGUGCCUUUug -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 47684 | 0.67 | 0.994367 |
Target: 5'- aAGCG-GCGUcCCACGCCcaaGCGGu--GCg -3' miRNA: 3'- aUUGCaCGUA-GGUGUGG---UGCCuuuUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 116585 | 0.67 | 0.994367 |
Target: 5'- cGGCGggGCGUCCGCcguCCcCGGAcuGGACc -3' miRNA: 3'- aUUGCa-CGUAGGUGu--GGuGCCU--UUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 121043 | 0.67 | 0.994367 |
Target: 5'- -uGCGUGUGUacCCACACCugGuGAuccGCa -3' miRNA: 3'- auUGCACGUA--GGUGUGGugC-CUuu-UG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 135481 | 0.67 | 0.993453 |
Target: 5'- cAGCGUauaCGUCCACGCCucCGGAu--- -3' miRNA: 3'- aUUGCAc--GUAGGUGUGGu-GCCUuuug -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 35229 | 0.67 | 0.993453 |
Target: 5'- aUGGCGUuaaacGCGUCCAgCACCACcguGGcuAGCa -3' miRNA: 3'- -AUUGCA-----CGUAGGU-GUGGUG---CCuuUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 85996 | 0.67 | 0.992424 |
Target: 5'- cAGCG-GCGUCaaaCGCgGCCACGGGcgGCg -3' miRNA: 3'- aUUGCaCGUAG---GUG-UGGUGCCUuuUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 88409 | 0.67 | 0.991271 |
Target: 5'- gGACGU---UCC-CACCuACGGGAAGCa -3' miRNA: 3'- aUUGCAcguAGGuGUGG-UGCCUUUUG- -5' |
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2721 | 5' | -49.5 | NC_001491.2 | + | 147687 | 0.67 | 0.991271 |
Target: 5'- gAGCGccggGCG-CCAgGCCuCGGGGAACa -3' miRNA: 3'- aUUGCa---CGUaGGUgUGGuGCCUUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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