miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27217 3' -58.8 NC_005832.1 + 20385 0.66 0.762815
Target:  5'- gUCCUCCCagaggguUCcACGGGGGCCCucagaggaggguuagCGUCg -3'
miRNA:   3'- -AGGAGGGc------AGaUGCUCCUGGG---------------GCAGg -5'
27217 3' -58.8 NC_005832.1 + 40877 0.66 0.759056
Target:  5'- gCCaggUCCGUCUuuACcAGGGCCCUG-CCa -3'
miRNA:   3'- aGGa--GGGCAGA--UGcUCCUGGGGCaGG- -5'
27217 3' -58.8 NC_005832.1 + 7715 0.66 0.759056
Target:  5'- cUCCUCCU---UugGAGuGACgCUGUCCu -3'
miRNA:   3'- -AGGAGGGcagAugCUC-CUGgGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 75965 0.66 0.749584
Target:  5'- gCCUCCUcagaGUCgaaGGGGAUCCUGUgCu -3'
miRNA:   3'- aGGAGGG----CAGaugCUCCUGGGGCAgG- -5'
27217 3' -58.8 NC_005832.1 + 26552 0.66 0.740012
Target:  5'- cCCUCuUUGUCUACaaGAGGcuccAUCCCGUCg -3'
miRNA:   3'- aGGAG-GGCAGAUG--CUCC----UGGGGCAGg -5'
27217 3' -58.8 NC_005832.1 + 81268 0.66 0.730348
Target:  5'- cCCguUCCCaGUCUACGAcGGCCCUccuaGUCUu -3'
miRNA:   3'- aGG--AGGG-CAGAUGCUcCUGGGG----CAGG- -5'
27217 3' -58.8 NC_005832.1 + 91202 0.66 0.730348
Target:  5'- gCCUgUCGUCgGCGAGGuCCgCCGUg- -3'
miRNA:   3'- aGGAgGGCAGaUGCUCCuGG-GGCAgg -5'
27217 3' -58.8 NC_005832.1 + 68921 0.67 0.720601
Target:  5'- -gCUCCCGUCguaGA-GACCCCGcacUCUg -3'
miRNA:   3'- agGAGGGCAGaugCUcCUGGGGC---AGG- -5'
27217 3' -58.8 NC_005832.1 + 58253 0.67 0.720601
Target:  5'- gUCCUCCUGauagcuccUCUGCGAG-ACCC--UCCa -3'
miRNA:   3'- -AGGAGGGC--------AGAUGCUCcUGGGgcAGG- -5'
27217 3' -58.8 NC_005832.1 + 54164 0.67 0.719622
Target:  5'- cCCUCCUGUUUguuaggACGAGGgcgggcaGCCCCagccUCCu -3'
miRNA:   3'- aGGAGGGCAGA------UGCUCC-------UGGGGc---AGG- -5'
27217 3' -58.8 NC_005832.1 + 93062 0.67 0.690952
Target:  5'- ---gCCCGUCUuacgACGAGGACCCaaaugcguuuUCCa -3'
miRNA:   3'- aggaGGGCAGA----UGCUCCUGGGgc--------AGG- -5'
27217 3' -58.8 NC_005832.1 + 87447 0.67 0.680962
Target:  5'- -aCUCCCGUC-ACuGGGGCCUCGg-- -3'
miRNA:   3'- agGAGGGCAGaUGcUCCUGGGGCagg -5'
27217 3' -58.8 NC_005832.1 + 43962 0.68 0.654826
Target:  5'- gCCUCCCGcCgucAUGAuggccaccaccggcaGGGCCCCGUgggCCa -3'
miRNA:   3'- aGGAGGGCaGa--UGCU---------------CCUGGGGCA---GG- -5'
27217 3' -58.8 NC_005832.1 + 44245 0.68 0.640693
Target:  5'- cUCCUCCCGUCcuUugGuccacGGGCCUCuuggCCg -3'
miRNA:   3'- -AGGAGGGCAG--AugCu----CCUGGGGca--GG- -5'
27217 3' -58.8 NC_005832.1 + 95676 0.68 0.640693
Target:  5'- -aCUCCC-UCU-CGAGGGCCCUGa-- -3'
miRNA:   3'- agGAGGGcAGAuGCUCCUGGGGCagg -5'
27217 3' -58.8 NC_005832.1 + 74880 0.68 0.640693
Target:  5'- --gUCCC-UCUACG-GGGCCCUGgCCg -3'
miRNA:   3'- aggAGGGcAGAUGCuCCUGGGGCaGG- -5'
27217 3' -58.8 NC_005832.1 + 67003 0.68 0.640693
Target:  5'- uUCCUCCCGUCUcCcuuaAGaACCCUGaUCCu -3'
miRNA:   3'- -AGGAGGGCAGAuGc---UCcUGGGGC-AGG- -5'
27217 3' -58.8 NC_005832.1 + 52043 0.68 0.634632
Target:  5'- uUUCUgaCCUGUCUGCGAuGGCCCucagccucugcacugCGUCCa -3'
miRNA:   3'- -AGGA--GGGCAGAUGCUcCUGGG---------------GCAGG- -5'
27217 3' -58.8 NC_005832.1 + 75266 0.68 0.63059
Target:  5'- aCCUCauagaGUUUaucaccAUGAGGACCCCGaCCg -3'
miRNA:   3'- aGGAGgg---CAGA------UGCUCCUGGGGCaGG- -5'
27217 3' -58.8 NC_005832.1 + 87467 0.68 0.620487
Target:  5'- gUCUCCCaccucGUCUccaggauggacGCGAGGACCagggcagCGUCCu -3'
miRNA:   3'- aGGAGGG-----CAGA-----------UGCUCCUGGg------GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.