miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27217 3' -58.8 NC_005832.1 + 58287 0.81 0.113207
Target:  5'- uUUCUCCCagagaCUAUGAGGACCUCGUCCu -3'
miRNA:   3'- -AGGAGGGca---GAUGCUCCUGGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 58253 0.67 0.720601
Target:  5'- gUCCUCCUGauagcuccUCUGCGAG-ACCC--UCCa -3'
miRNA:   3'- -AGGAGGGC--------AGAUGCUCcUGGGgcAGG- -5'
27217 3' -58.8 NC_005832.1 + 81268 0.66 0.730348
Target:  5'- cCCguUCCCaGUCUACGAcGGCCCUccuaGUCUu -3'
miRNA:   3'- aGG--AGGG-CAGAUGCUcCUGGGG----CAGG- -5'
27217 3' -58.8 NC_005832.1 + 75965 0.66 0.749584
Target:  5'- gCCUCCUcagaGUCgaaGGGGAUCCUGUgCu -3'
miRNA:   3'- aGGAGGG----CAGaugCUCCUGGGGCAgG- -5'
27217 3' -58.8 NC_005832.1 + 54854 0.72 0.4197
Target:  5'- gUCCUCUCGcagGCGucGaACCCCGUCCc -3'
miRNA:   3'- -AGGAGGGCagaUGCucC-UGGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 44063 0.71 0.48293
Target:  5'- cUCCUCuuGUCgGCGcAGGACaCgGUCCu -3'
miRNA:   3'- -AGGAGggCAGaUGC-UCCUGgGgCAGG- -5'
27217 3' -58.8 NC_005832.1 + 5139 0.69 0.5603
Target:  5'- aUCCcuuUCCC--CUGCccAGGACCCUGUCCa -3'
miRNA:   3'- -AGG---AGGGcaGAUGc-UCCUGGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 65322 0.69 0.600316
Target:  5'- gUCCUCCUGUUUACcGGGccguaGCCCUGaagcUCCc -3'
miRNA:   3'- -AGGAGGGCAGAUGcUCC-----UGGGGC----AGG- -5'
27217 3' -58.8 NC_005832.1 + 44245 0.68 0.640693
Target:  5'- cUCCUCCCGUCcuUugGuccacGGGCCUCuuggCCg -3'
miRNA:   3'- -AGGAGGGCAG--AugCu----CCUGGGGca--GG- -5'
27217 3' -58.8 NC_005832.1 + 87447 0.67 0.680962
Target:  5'- -aCUCCCGUC-ACuGGGGCCUCGg-- -3'
miRNA:   3'- agGAGGGCAGaUGcUCCUGGGGCagg -5'
27217 3' -58.8 NC_005832.1 + 67003 0.68 0.640693
Target:  5'- uUCCUCCCGUCUcCcuuaAGaACCCUGaUCCu -3'
miRNA:   3'- -AGGAGGGCAGAuGc---UCcUGGGGC-AGG- -5'
27217 3' -58.8 NC_005832.1 + 35285 0.76 0.245351
Target:  5'- gCUUCCaCGUCg--GAGGGCCCCuGUCCg -3'
miRNA:   3'- aGGAGG-GCAGaugCUCCUGGGG-CAGG- -5'
27217 3' -58.8 NC_005832.1 + 93062 0.67 0.690952
Target:  5'- ---gCCCGUCUuacgACGAGGACCCaaaugcguuuUCCa -3'
miRNA:   3'- aggaGGGCAGA----UGCUCCUGGGgc--------AGG- -5'
27217 3' -58.8 NC_005832.1 + 43390 0.73 0.346244
Target:  5'- gUCa-CCUGUC-ACGccgcacAGGACCCCGUCCa -3'
miRNA:   3'- -AGgaGGGCAGaUGC------UCCUGGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 49234 0.68 0.610394
Target:  5'- aCCUCUCaaagggagagguGUUguacuCGAGGAUCUCGUCCg -3'
miRNA:   3'- aGGAGGG------------CAGau---GCUCCUGGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 54164 0.67 0.719622
Target:  5'- cCCUCCUGUUUguuaggACGAGGgcgggcaGCCCCagccUCCu -3'
miRNA:   3'- aGGAGGGCAGA------UGCUCC-------UGGGGc---AGG- -5'
27217 3' -58.8 NC_005832.1 + 26552 0.66 0.740012
Target:  5'- cCCUCuUUGUCUACaaGAGGcuccAUCCCGUCg -3'
miRNA:   3'- aGGAG-GGCAGAUG--CUCC----UGGGGCAGg -5'
27217 3' -58.8 NC_005832.1 + 44779 0.73 0.374494
Target:  5'- cUCCUgCCCGUCgagcccgaguaGAGGACgCUGUCCc -3'
miRNA:   3'- -AGGA-GGGCAGaug--------CUCCUGgGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 44191 0.7 0.521057
Target:  5'- cCCUCCUG---ACGAGGGCCCCcgcgcacaacggGUCUa -3'
miRNA:   3'- aGGAGGGCagaUGCUCCUGGGG------------CAGG- -5'
27217 3' -58.8 NC_005832.1 + 43962 0.68 0.654826
Target:  5'- gCCUCCCGcCgucAUGAuggccaccaccggcaGGGCCCCGUgggCCa -3'
miRNA:   3'- aGGAGGGCaGa--UGCU---------------CCUGGGGCA---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.