miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27223 5' -61.2 NC_005832.1 + 79280 0.66 0.599892
Target:  5'- gGCCCUCACCCUcagGGAGAcguagGCCUcaccGCu -3'
miRNA:   3'- -UGGGAGUGGGA---CCUCU-----CGGAcuccCG- -5'
27223 5' -61.2 NC_005832.1 + 53901 0.66 0.589762
Target:  5'- -aCCUCACCagaaaGGGGuccugaaggaGGCCUG-GGGCc -3'
miRNA:   3'- ugGGAGUGGga---CCUC----------UCGGACuCCCG- -5'
27223 5' -61.2 NC_005832.1 + 54293 0.66 0.579663
Target:  5'- gGCCCUCucaCCUGcuGGGUCUGAGcGCu -3'
miRNA:   3'- -UGGGAGug-GGACcuCUCGGACUCcCG- -5'
27223 5' -61.2 NC_005832.1 + 28088 0.66 0.579663
Target:  5'- gGCCCUUugCCgUGGAGG--UUGcGGGCg -3'
miRNA:   3'- -UGGGAGugGG-ACCUCUcgGACuCCCG- -5'
27223 5' -61.2 NC_005832.1 + 101828 0.66 0.578655
Target:  5'- cUCCUCugCUgugaggggaGGAGAGUCUGcguugacGGGGCc -3'
miRNA:   3'- uGGGAGugGGa--------CCUCUCGGAC-------UCCCG- -5'
27223 5' -61.2 NC_005832.1 + 44771 0.66 0.575633
Target:  5'- cGCUCUCACCCggcagcccgUGGcGGGCagguccagggagGGGGGCa -3'
miRNA:   3'- -UGGGAGUGGG---------ACCuCUCGga----------CUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 39812 0.66 0.5696
Target:  5'- -aCC-CACCUUGGAcGAGUC-GAGGGg -3'
miRNA:   3'- ugGGaGUGGGACCU-CUCGGaCUCCCg -5'
27223 5' -61.2 NC_005832.1 + 56311 0.66 0.5696
Target:  5'- aGCCCUCuAUCUUGacGGGCCUGGGGa- -3'
miRNA:   3'- -UGGGAG-UGGGACcuCUCGGACUCCcg -5'
27223 5' -61.2 NC_005832.1 + 49276 0.66 0.559582
Target:  5'- cGCUCUCGCCCuUGGGGuuaAGCCUcugcauGGCg -3'
miRNA:   3'- -UGGGAGUGGG-ACCUC---UCGGAcuc---CCG- -5'
27223 5' -61.2 NC_005832.1 + 67360 0.66 0.559582
Target:  5'- cCCCUCuCCC---AGGGCCUGAGGa- -3'
miRNA:   3'- uGGGAGuGGGaccUCUCGGACUCCcg -5'
27223 5' -61.2 NC_005832.1 + 76046 0.66 0.549613
Target:  5'- cCCCUCuCCUUGGccAGGGCCcUGGuGGCc -3'
miRNA:   3'- uGGGAGuGGGACC--UCUCGG-ACUcCCG- -5'
27223 5' -61.2 NC_005832.1 + 56042 0.66 0.549613
Target:  5'- uCCCUUGCCCUGGuAGAGgccgggaaagauCCUaaaggGAGGuGCa -3'
miRNA:   3'- uGGGAGUGGGACC-UCUC------------GGA-----CUCC-CG- -5'
27223 5' -61.2 NC_005832.1 + 30173 0.66 0.549613
Target:  5'- uGCgCUC-CCCUGcGAG-GUUUGGGGGUu -3'
miRNA:   3'- -UGgGAGuGGGAC-CUCuCGGACUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 41538 0.66 0.539699
Target:  5'- cGCCCUCGguagucaugcCCCUGGAcaugGAGUCUuacagcgacGAGGaGCu -3'
miRNA:   3'- -UGGGAGU----------GGGACCU----CUCGGA---------CUCC-CG- -5'
27223 5' -61.2 NC_005832.1 + 79675 0.67 0.529847
Target:  5'- gGCCCUgagGCCCgGGuaAGGGUgCUGGGGGUg -3'
miRNA:   3'- -UGGGAg--UGGGaCC--UCUCG-GACUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 32151 0.67 0.529847
Target:  5'- gACCCUCccuuuCCgUGG-GAGCCgacauucagcaUGAuGGGCg -3'
miRNA:   3'- -UGGGAGu----GGgACCuCUCGG-----------ACU-CCCG- -5'
27223 5' -61.2 NC_005832.1 + 11784 0.67 0.520062
Target:  5'- cCCCUgGCUCggccggGGGGAgGUCgacGAGGGCa -3'
miRNA:   3'- uGGGAgUGGGa-----CCUCU-CGGa--CUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 37433 0.67 0.520062
Target:  5'- uGCUCUUuuuuGCCUUGG-GAGCCUGuccGGGa -3'
miRNA:   3'- -UGGGAG----UGGGACCuCUCGGACu--CCCg -5'
27223 5' -61.2 NC_005832.1 + 80826 0.67 0.520062
Target:  5'- cCCCUCcaggGCCCUGGAGGGgac-GGGGUc -3'
miRNA:   3'- uGGGAG----UGGGACCUCUCggacUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 91243 0.67 0.520062
Target:  5'- uCCgUCACCCUcuuuAGCCUGuGGGCc -3'
miRNA:   3'- uGGgAGUGGGAccucUCGGACuCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.