miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2723 5' -59.8 NC_001491.2 + 150224 0.7 0.55443
Target:  5'- -CCc-CCAgCCCGCGUCU-CACCCCCg -3'
miRNA:   3'- uGGaaGGU-GGGUGCAGGuGUGGGGGg -5'
2723 5' -59.8 NC_001491.2 + 147560 0.66 0.777446
Target:  5'- cGCCUgaaUCCGCCCcgACgGUCgGgGCCCUCg -3'
miRNA:   3'- -UGGA---AGGUGGG--UG-CAGgUgUGGGGGg -5'
2723 5' -59.8 NC_001491.2 + 147246 0.68 0.633193
Target:  5'- gGCCUUCUGCggCugGgCUGCugCCCCCg -3'
miRNA:   3'- -UGGAAGGUGg-GugCaGGUGugGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 145883 0.67 0.702147
Target:  5'- cCCggUCC-CCC-CGUaUCGCACCCUCCc -3'
miRNA:   3'- uGGa-AGGuGGGuGCA-GGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 145014 0.67 0.711841
Target:  5'- gACCgggUCGgCCGCGUCCcCACCgCCg -3'
miRNA:   3'- -UGGaa-GGUgGGUGCAGGuGUGGgGGg -5'
2723 5' -59.8 NC_001491.2 + 143189 0.69 0.61238
Target:  5'- cGCCUUCaua-CACGUCCGCACgagggcgCCCUCg -3'
miRNA:   3'- -UGGAAGguggGUGCAGGUGUG-------GGGGG- -5'
2723 5' -59.8 NC_001491.2 + 143055 0.66 0.768373
Target:  5'- cGCCggccCCACCCcaucgACGUaacaCgGCGCCCCUCc -3'
miRNA:   3'- -UGGaa--GGUGGG-----UGCA----GgUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 142951 1.1 0.001254
Target:  5'- cACCUUCCACCCACGUCCACACCCCCCc -3'
miRNA:   3'- -UGGAAGGUGGGUGCAGGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 141739 0.68 0.676705
Target:  5'- cGCCgUCCACCagcccccucauccCGUcCCugACCCCCUc -3'
miRNA:   3'- -UGGaAGGUGGgu-----------GCA-GGugUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 140422 0.66 0.747088
Target:  5'- cGCCagCaggcguguguguguuCCCGCGauUCCACGCCCCgCCg -3'
miRNA:   3'- -UGGaaGgu-------------GGGUGC--AGGUGUGGGG-GG- -5'
2723 5' -59.8 NC_001491.2 + 140301 0.69 0.613371
Target:  5'- gGCgCguaCGgCCACGUCCACaacgGCUCCCCg -3'
miRNA:   3'- -UG-GaagGUgGGUGCAGGUG----UGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 140090 0.71 0.497268
Target:  5'- cGCCgggCCGCCCGCGgaggCCugGCCgCgCg -3'
miRNA:   3'- -UGGaa-GGUGGGUGCa---GGugUGGgGgG- -5'
2723 5' -59.8 NC_001491.2 + 139696 0.7 0.55443
Target:  5'- uACCUgCgCGCCCGCGgCCGCaaGCUCCCUc -3'
miRNA:   3'- -UGGAaG-GUGGGUGCaGGUG--UGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 137771 0.73 0.360332
Target:  5'- gGCgUUCCAUCCACGU-CACGUCUCCCg -3'
miRNA:   3'- -UGgAAGGUGGGUGCAgGUGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 128771 0.66 0.762875
Target:  5'- aGCUga-CugUCACaGUCCuggaugccguucgacGCACCCCCCg -3'
miRNA:   3'- -UGGaagGugGGUG-CAGG---------------UGUGGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 125312 0.67 0.731029
Target:  5'- cGCCUUUaCACCCACcaCCGCcuaGCCCUgCa -3'
miRNA:   3'- -UGGAAG-GUGGGUGcaGGUG---UGGGGgG- -5'
2723 5' -59.8 NC_001491.2 + 125145 0.73 0.352686
Target:  5'- uGCCaacCCGCCCcaccuCGUCUugGCCCCCa -3'
miRNA:   3'- -UGGaa-GGUGGGu----GCAGGugUGGGGGg -5'
2723 5' -59.8 NC_001491.2 + 123115 0.72 0.417005
Target:  5'- gGCCcggcgCCGCUCcggagcGCGUCCGCugCCUCCg -3'
miRNA:   3'- -UGGaa---GGUGGG------UGCAGGUGugGGGGG- -5'
2723 5' -59.8 NC_001491.2 + 123017 0.66 0.772016
Target:  5'- cGCCgcggugUCCgugcuggucggguauAgCC-CGUCCGCGCCCgCCCc -3'
miRNA:   3'- -UGGa-----AGG---------------UgGGuGCAGGUGUGGG-GGG- -5'
2723 5' -59.8 NC_001491.2 + 121991 0.7 0.55443
Target:  5'- gACUcgucgCCGCUCACGUCaCACuCCuCCCCa -3'
miRNA:   3'- -UGGaa---GGUGGGUGCAG-GUGuGG-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.