miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27238 3' -57 NC_005832.1 + 91811 0.66 0.832368
Target:  5'- gGUCCCGUCcuCGggagccgguuuUAGGCUgCUCCUggCCCa -3'
miRNA:   3'- -CGGGGCAGuuGC-----------GUCUGA-GAGGA--GGG- -5'
27238 3' -57 NC_005832.1 + 21112 0.66 0.832368
Target:  5'- cGCCCCGgc--CGUccuGACUgaCCUCCUg -3'
miRNA:   3'- -CGGGGCaguuGCGu--CUGAgaGGAGGG- -5'
27238 3' -57 NC_005832.1 + 95447 0.66 0.823894
Target:  5'- aGCCUCccguaGUCGGCGC--ACUC-CCUCUCg -3'
miRNA:   3'- -CGGGG-----CAGUUGCGucUGAGaGGAGGG- -5'
27238 3' -57 NC_005832.1 + 7107 0.66 0.823894
Target:  5'- uCCCCGgcggugacCAGCGUagaggAGGCUUcCCUCCUg -3'
miRNA:   3'- cGGGGCa-------GUUGCG-----UCUGAGaGGAGGG- -5'
27238 3' -57 NC_005832.1 + 13720 0.66 0.823894
Target:  5'- aGUCCCGUCuuccCGgGGACggucauugCUCUucuUCCCa -3'
miRNA:   3'- -CGGGGCAGuu--GCgUCUGa-------GAGG---AGGG- -5'
27238 3' -57 NC_005832.1 + 14106 0.66 0.823894
Target:  5'- gGCaCCCGUCG----AGACUCUUgUCCUg -3'
miRNA:   3'- -CG-GGGCAGUugcgUCUGAGAGgAGGG- -5'
27238 3' -57 NC_005832.1 + 27891 0.66 0.815243
Target:  5'- cCCCUGUgGuCGUAGACUgCguccCCUCCUa -3'
miRNA:   3'- cGGGGCAgUuGCGUCUGA-Ga---GGAGGG- -5'
27238 3' -57 NC_005832.1 + 65345 0.66 0.815243
Target:  5'- -aCCUGUCGACggGCAuGACgUCcgUCCUCCUg -3'
miRNA:   3'- cgGGGCAGUUG--CGU-CUG-AG--AGGAGGG- -5'
27238 3' -57 NC_005832.1 + 27679 0.66 0.815243
Target:  5'- gGCCUCGaaggugucuUCGA-GCAGGCUCUCC-CUg -3'
miRNA:   3'- -CGGGGC---------AGUUgCGUCUGAGAGGaGGg -5'
27238 3' -57 NC_005832.1 + 43486 0.66 0.806423
Target:  5'- uCCUCGUCccCGuCGGACUUUC-UCCCu -3'
miRNA:   3'- cGGGGCAGuuGC-GUCUGAGAGgAGGG- -5'
27238 3' -57 NC_005832.1 + 32311 0.66 0.797443
Target:  5'- gGCUCCGgacccCAugcCGUGGACUCcCCUCgCCg -3'
miRNA:   3'- -CGGGGCa----GUu--GCGUCUGAGaGGAG-GG- -5'
27238 3' -57 NC_005832.1 + 25315 0.66 0.797443
Target:  5'- uGCCUuaaaGUCGuC-CAGGCUCUCCaCCCu -3'
miRNA:   3'- -CGGGg---CAGUuGcGUCUGAGAGGaGGG- -5'
27238 3' -57 NC_005832.1 + 39428 0.66 0.797443
Target:  5'- cGCCagGUgGACGUGGACUCcgUCUgcgCCCg -3'
miRNA:   3'- -CGGggCAgUUGCGUCUGAG--AGGa--GGG- -5'
27238 3' -57 NC_005832.1 + 6812 0.66 0.797443
Target:  5'- cCCCCGUCuaucuccuuACcCGGcCUCgacCCUCCCa -3'
miRNA:   3'- cGGGGCAGu--------UGcGUCuGAGa--GGAGGG- -5'
27238 3' -57 NC_005832.1 + 41892 0.67 0.779039
Target:  5'- aGCCCU--UGACGCuGACgggUUUCUCCCu -3'
miRNA:   3'- -CGGGGcaGUUGCGuCUGa--GAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 30113 0.67 0.779039
Target:  5'- uCCCUGUCGAgGgcuucCAGcUUCUCCUCCa -3'
miRNA:   3'- cGGGGCAGUUgC-----GUCuGAGAGGAGGg -5'
27238 3' -57 NC_005832.1 + 54503 0.67 0.760102
Target:  5'- aCCCUGUCcAC-CGuGCUgUCCUCCCc -3'
miRNA:   3'- cGGGGCAGuUGcGUcUGAgAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 98191 0.67 0.750456
Target:  5'- gGCCcaCCGUgGAaaaGCAGGCcgUCCUCCUg -3'
miRNA:   3'- -CGG--GGCAgUUg--CGUCUGagAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 13786 0.67 0.740705
Target:  5'- -gCCCGUUAuccUGUAGGCgg-CCUCCCu -3'
miRNA:   3'- cgGGGCAGUu--GCGUCUGagaGGAGGG- -5'
27238 3' -57 NC_005832.1 + 30616 0.67 0.740705
Target:  5'- gGCgCCGUCAcCGCGaGCggUCUUCCCu -3'
miRNA:   3'- -CGgGGCAGUuGCGUcUGagAGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.