miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27409 3' -64.9 NC_005869.1 + 23724 0.66 0.221311
Target:  5'- uGGACCCg--CGCCuCCGUCUCCgccgucGGCa -3'
miRNA:   3'- gUCUGGGgcaGCGGcGGCAGGGG------CCG- -5'
27409 3' -64.9 NC_005869.1 + 24959 0.66 0.214139
Target:  5'- -uGACCCUG-CGCCGCUGggucauaaacuucuUCCUCuGCg -3'
miRNA:   3'- guCUGGGGCaGCGGCGGC--------------AGGGGcCG- -5'
27409 3' -64.9 NC_005869.1 + 13431 0.66 0.21036
Target:  5'- cCAGcuucUCCCGcCGCCaccaGCCGcgCCCCGGg -3'
miRNA:   3'- -GUCu---GGGGCaGCGG----CGGCa-GGGGCCg -5'
27409 3' -64.9 NC_005869.1 + 8500 0.66 0.205061
Target:  5'- gAGcCCCCGcgUGCCGgccuCCGcggCCUCGGCg -3'
miRNA:   3'- gUCuGGGGCa-GCGGC----GGCa--GGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 17486 0.66 0.205061
Target:  5'- cCAG-CCCCG-CGCgCGCCGcgugcgCCUCGcGCc -3'
miRNA:   3'- -GUCuGGGGCaGCG-GCGGCa-----GGGGC-CG- -5'
27409 3' -64.9 NC_005869.1 + 20592 0.66 0.199878
Target:  5'- aGGGCCCCGgggCGCgGCUGguggCGGCg -3'
miRNA:   3'- gUCUGGGGCa--GCGgCGGCagggGCCG- -5'
27409 3' -64.9 NC_005869.1 + 21055 0.66 0.199878
Target:  5'- gCGGcccuCCUCGUCGCUGUcaaaggCGUCCCagGGCc -3'
miRNA:   3'- -GUCu---GGGGCAGCGGCG------GCAGGGg-CCG- -5'
27409 3' -64.9 NC_005869.1 + 23216 0.66 0.199878
Target:  5'- -uGGCCCCGUCGuuGCgcagcugcaccaCGUugcggCCCCaGCg -3'
miRNA:   3'- guCUGGGGCAGCggCG------------GCA-----GGGGcCG- -5'
27409 3' -64.9 NC_005869.1 + 29428 0.66 0.194809
Target:  5'- ----gCCCG-CGCCGCCG-CCCgCGGa -3'
miRNA:   3'- gucugGGGCaGCGGCGGCaGGG-GCCg -5'
27409 3' -64.9 NC_005869.1 + 18804 0.67 0.189854
Target:  5'- -cGGCUCCG--GCCGCgG-CUCCGGCg -3'
miRNA:   3'- guCUGGGGCagCGGCGgCaGGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 16037 0.67 0.189854
Target:  5'- cCGGugCCagccUCGCCuaCGUCCCgGGUc -3'
miRNA:   3'- -GUCugGGgc--AGCGGcgGCAGGGgCCG- -5'
27409 3' -64.9 NC_005869.1 + 16613 0.67 0.189854
Target:  5'- -uGGCUCCG-CGCCgggcggGCCGgCCCCaGGCc -3'
miRNA:   3'- guCUGGGGCaGCGG------CGGCaGGGG-CCG- -5'
27409 3' -64.9 NC_005869.1 + 15330 0.67 0.189854
Target:  5'- -uGACCCUGUgGCCGaCGuggucaacgcgaUCgCCGGCg -3'
miRNA:   3'- guCUGGGGCAgCGGCgGC------------AGgGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 16974 0.67 0.188389
Target:  5'- gAGcCCCCG-CGCCgcgugccccgcaggGCCGUgcgggacaUCCCGGCc -3'
miRNA:   3'- gUCuGGGGCaGCGG--------------CGGCA--------GGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 16827 0.67 0.185009
Target:  5'- aCAGACCCCa---CUGCCGcCCgUGGCg -3'
miRNA:   3'- -GUCUGGGGcagcGGCGGCaGGgGCCG- -5'
27409 3' -64.9 NC_005869.1 + 13307 0.67 0.175647
Target:  5'- cCAGGCgCCGcCGCCgGCCGccgCCgCCGcGCc -3'
miRNA:   3'- -GUCUGgGGCaGCGG-CGGCa--GG-GGC-CG- -5'
27409 3' -64.9 NC_005869.1 + 24613 0.67 0.175647
Target:  5'- aAGAuCCCCGUCaGCUGCCGcgccaaccgCCCaCGaGCc -3'
miRNA:   3'- gUCU-GGGGCAG-CGGCGGCa--------GGG-GC-CG- -5'
27409 3' -64.9 NC_005869.1 + 2053 0.67 0.175647
Target:  5'- cCGGAUCUgGuuuagaUCGCCGCCGg-CCCGGg -3'
miRNA:   3'- -GUCUGGGgC------AGCGGCGGCagGGGCCg -5'
27409 3' -64.9 NC_005869.1 + 15472 0.67 0.175647
Target:  5'- gCGGuAgCCCGgCGCCGCCG-CgCgCGGCg -3'
miRNA:   3'- -GUC-UgGGGCaGCGGCGGCaG-GgGCCG- -5'
27409 3' -64.9 NC_005869.1 + 18454 0.67 0.162393
Target:  5'- gAGcGCCUgCGcCGCCGCCGggugcuccgCCuCCGGCg -3'
miRNA:   3'- gUC-UGGG-GCaGCGGCGGCa--------GG-GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.