miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27419 3' -68.7 NC_005869.1 + 8304 0.66 0.114836
Target:  5'- aGGUgGGCCCG-GCgGCgCGGGCCaGCu -3'
miRNA:   3'- cUCGaCCGGGCgCGgCG-GCCCGGgUG- -5'
27419 3' -68.7 NC_005869.1 + 10626 0.66 0.108786
Target:  5'- -cGCcGGCCgGCGCC-CUGGGCgCGg -3'
miRNA:   3'- cuCGaCCGGgCGCGGcGGCCCGgGUg -5'
27419 3' -68.7 NC_005869.1 + 10710 0.66 0.108786
Target:  5'- aGGGcCUGGCgCG-GCUGUCGGGCgCgGCg -3'
miRNA:   3'- -CUC-GACCGgGCgCGGCGGCCCG-GgUG- -5'
27419 3' -68.7 NC_005869.1 + 20625 0.66 0.105875
Target:  5'- aAGCUGGCCaCGgGCagGCCcaucuccuGGGCgCGCg -3'
miRNA:   3'- cUCGACCGG-GCgCGg-CGG--------CCCGgGUG- -5'
27419 3' -68.7 NC_005869.1 + 9122 0.66 0.105875
Target:  5'- gGAGUgGGCUCGCGCgGCgcaccagcaGGGUCUGCa -3'
miRNA:   3'- -CUCGaCCGGGCGCGgCGg--------CCCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 15373 0.66 0.104163
Target:  5'- -cGCc-GCCgGCGCCGCCaucgucgacgucggaGGGCCgCGCg -3'
miRNA:   3'- cuCGacCGGgCGCGGCGG---------------CCCGG-GUG- -5'
27419 3' -68.7 NC_005869.1 + 24398 0.66 0.101369
Target:  5'- -uGCUGGCuaGaCGCCuucgucgaacgcuucGCCGGGUCCGa -3'
miRNA:   3'- cuCGACCGggC-GCGG---------------CGGCCCGGGUg -5'
27419 3' -68.7 NC_005869.1 + 22568 0.66 0.100271
Target:  5'- uGAGCuccuugucauUGaGCUCGCGCCGCCGcgaGGUgcugaCCACg -3'
miRNA:   3'- -CUCG----------AC-CGGGCGCGGCGGC---CCG-----GGUG- -5'
27419 3' -68.7 NC_005869.1 + 5268 0.66 0.100271
Target:  5'- cGAGCggguggagGGUCCgguccuuccaGgGCCGgaGGGCCCGCg -3'
miRNA:   3'- -CUCGa-------CCGGG----------CgCGGCggCCCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 25637 0.66 0.100271
Target:  5'- cGAGU--GCCCGcCGCCccuCUGGGCUCACu -3'
miRNA:   3'- -CUCGacCGGGC-GCGGc--GGCCCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 15977 0.66 0.097575
Target:  5'- -uGCUGGgCaCGCGCC-CCaGGCgCCGCu -3'
miRNA:   3'- cuCGACCgG-GCGCGGcGGcCCG-GGUG- -5'
27419 3' -68.7 NC_005869.1 + 25501 0.67 0.09599
Target:  5'- nAGCU-GCCCGCcugagaccggccgccGCCGCCGaGGCCgCGg -3'
miRNA:   3'- cUCGAcCGGGCG---------------CGGCGGC-CCGG-GUg -5'
27419 3' -68.7 NC_005869.1 + 17553 0.67 0.094947
Target:  5'- uGGCggUGGCa-GCGCCGCCc-GCCCGCa -3'
miRNA:   3'- cUCG--ACCGggCGCGGCGGccCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 7749 0.67 0.094688
Target:  5'- aGGCgGGCCUGCagggcguGCCGCaGGGCCUu- -3'
miRNA:   3'- cUCGaCCGGGCG-------CGGCGgCCCGGGug -5'
27419 3' -68.7 NC_005869.1 + 7252 0.67 0.092134
Target:  5'- uGGGCUGGuUCUGCuGCCGCCGcugcugcGGCCUu- -3'
miRNA:   3'- -CUCGACC-GGGCG-CGGCGGC-------CCGGGug -5'
27419 3' -68.7 NC_005869.1 + 23293 0.67 0.090882
Target:  5'- uGAGCUGcaCCCGUgggugccgcucggggGCCGCCGcGCCCGa -3'
miRNA:   3'- -CUCGACc-GGGCG---------------CGGCGGCcCGGGUg -5'
27419 3' -68.7 NC_005869.1 + 24653 0.67 0.084859
Target:  5'- cGGCUGcccuugcGCCgGCGCCGUCcccGGCCUGCg -3'
miRNA:   3'- cUCGAC-------CGGgCGCGGCGGc--CCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 13214 0.67 0.079876
Target:  5'- -cGCUggGGCUCGCGCCGCuccagccuggccagCGGcGCCgACa -3'
miRNA:   3'- cuCGA--CCGGGCGCGGCG--------------GCC-CGGgUG- -5'
27419 3' -68.7 NC_005869.1 + 2052 0.68 0.076218
Target:  5'- cGGUgggGGCCgUGCGCaacaGCCGGGCCgCGg -3'
miRNA:   3'- cUCGa--CCGG-GCGCGg---CGGCCCGG-GUg -5'
27419 3' -68.7 NC_005869.1 + 25803 0.68 0.076218
Target:  5'- -cGCUGGgacccCCCGC-CCGa-GGGCCCGCc -3'
miRNA:   3'- cuCGACC-----GGGCGcGGCggCCCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.