miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27437 3' -67.3 NC_005869.1 + 10132 0.65 0.151773
Target:  5'- -aGCcgGCGCgGGGGaggccgcaagcgcGCGGCCUCUccgcccgUGCa -3'
miRNA:   3'- gcCGa-CGCGgCCCC-------------CGCCGGAGG-------ACG- -5'
27437 3' -67.3 NC_005869.1 + 20742 0.66 0.144722
Target:  5'- -uGCUGCuccuGCCGGGGGCGaCCUacaCCUa- -3'
miRNA:   3'- gcCGACG----CGGCCCCCGCcGGA---GGAcg -5'
27437 3' -67.3 NC_005869.1 + 9786 0.66 0.140934
Target:  5'- cCGGC-GCGCUGcaGGcggaugcggucGGCcaugccccaGGCCUCCUGCu -3'
miRNA:   3'- -GCCGaCGCGGC--CC-----------CCG---------CCGGAGGACG- -5'
27437 3' -67.3 NC_005869.1 + 15566 0.66 0.140934
Target:  5'- uGGC-GCGCCGGaGGCGGagcaC-CCgGCg -3'
miRNA:   3'- gCCGaCGCGGCCcCCGCCg---GaGGaCG- -5'
27437 3' -67.3 NC_005869.1 + 7508 0.66 0.137238
Target:  5'- gGGCaccucGCGgCGGuGGGCGaGCa-CCUGCg -3'
miRNA:   3'- gCCGa----CGCgGCC-CCCGC-CGgaGGACG- -5'
27437 3' -67.3 NC_005869.1 + 18446 0.66 0.133631
Target:  5'- cCGGCgcggagcgccUGCGCCGccgccGGGUGcuccGCCUCCgGCg -3'
miRNA:   3'- -GCCG----------ACGCGGCc----CCCGC----CGGAGGaCG- -5'
27437 3' -67.3 NC_005869.1 + 11036 0.67 0.123328
Target:  5'- gGGCUGcCGCCaGGugccccugcuGGGcCGGCagaCCUGCa -3'
miRNA:   3'- gCCGAC-GCGG-CC----------CCC-GCCGga-GGACG- -5'
27437 3' -67.3 NC_005869.1 + 12369 0.67 0.116874
Target:  5'- gGGCUGCaggcccccGCUGGGGagcGCGGgcacguguCCUcCCUGCu -3'
miRNA:   3'- gCCGACG--------CGGCCCC---CGCC--------GGA-GGACG- -5'
27437 3' -67.3 NC_005869.1 + 6508 0.67 0.11656
Target:  5'- aGGUagGCGUCGGuGGgguugaaggaggaGCGGCCUCC-GCc -3'
miRNA:   3'- gCCGa-CGCGGCC-CC-------------CGCCGGAGGaCG- -5'
27437 3' -67.3 NC_005869.1 + 18570 0.67 0.110736
Target:  5'- gCGGCgGCGCCGGGcuaCcGCCUCCaccGCg -3'
miRNA:   3'- -GCCGaCGCGGCCCcc-GcCGGAGGa--CG- -5'
27437 3' -67.3 NC_005869.1 + 23413 0.67 0.107782
Target:  5'- cCGcGCccaggGCGCCGGccGGCGGCUUCauCUGCc -3'
miRNA:   3'- -GC-CGa----CGCGGCCc-CCGCCGGAG--GACG- -5'
27437 3' -67.3 NC_005869.1 + 11841 0.67 0.10749
Target:  5'- aGGCaGCGguCCGGGGuGCucuggauGGCgCUCUUGCg -3'
miRNA:   3'- gCCGaCGC--GGCCCC-CG-------CCG-GAGGACG- -5'
27437 3' -67.3 NC_005869.1 + 185 0.68 0.102093
Target:  5'- gGGgUGgaGCCcuGGGGCGGuCCUCCgcgggGCg -3'
miRNA:   3'- gCCgACg-CGGc-CCCCGCC-GGAGGa----CG- -5'
27437 3' -67.3 NC_005869.1 + 10716 0.68 0.094089
Target:  5'- uGGCgcgGCuGUCGGGcgcGGCGGCCcCCgagcgGCa -3'
miRNA:   3'- gCCGa--CG-CGGCCC---CCGCCGGaGGa----CG- -5'
27437 3' -67.3 NC_005869.1 + 27603 0.68 0.089087
Target:  5'- uGGCUGgGCCGu--GC-GCCUCCUGCc -3'
miRNA:   3'- gCCGACgCGGCcccCGcCGGAGGACG- -5'
27437 3' -67.3 NC_005869.1 + 23066 0.69 0.086681
Target:  5'- cCGcGUUGCccauCCGGGGGUagcaGGCCUUCUGg -3'
miRNA:   3'- -GC-CGACGc---GGCCCCCG----CCGGAGGACg -5'
27437 3' -67.3 NC_005869.1 + 6980 0.69 0.086681
Target:  5'- aGGCg--GCUGGGGaaGGCCggCCUGCg -3'
miRNA:   3'- gCCGacgCGGCCCCcgCCGGa-GGACG- -5'
27437 3' -67.3 NC_005869.1 + 11975 0.69 0.082055
Target:  5'- cCGGCgacgGCcaGCCaGuGGCGGCCUCCggugugGCg -3'
miRNA:   3'- -GCCGa---CG--CGGcCcCCGCCGGAGGa-----CG- -5'
27437 3' -67.3 NC_005869.1 + 5324 0.69 0.082055
Target:  5'- uCGGUgacgGUGaaGGGGGCGGUCUggggCUGCu -3'
miRNA:   3'- -GCCGa---CGCggCCCCCGCCGGAg---GACG- -5'
27437 3' -67.3 NC_005869.1 + 17648 0.7 0.071499
Target:  5'- gCGGCUGCagGCUGGGuGuGUGG-UUCCUGCc -3'
miRNA:   3'- -GCCGACG--CGGCCC-C-CGCCgGAGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.