Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27441 | 5' | -55.1 | NC_005869.1 | + | 31546 | 0.66 | 0.591282 |
Target: 5'- -cGCUGCCACgaGCUgagCGAgccGGUGGCUCg -3' miRNA: 3'- gaUGAUGGUGa-UGGg--GCU---UCGCCGAG- -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 25178 | 0.66 | 0.579894 |
Target: 5'- gUGgaGgCACU-CUCCGAGGCGGCg- -3' miRNA: 3'- gAUgaUgGUGAuGGGGCUUCGCCGag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 24417 | 0.66 | 0.579894 |
Target: 5'- -cGCaGCCGCggagGCCgCCGAGGCGccCUCg -3' miRNA: 3'- gaUGaUGGUGa---UGG-GGCUUCGCc-GAG- -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 23234 | 0.66 | 0.557267 |
Target: 5'- gCUGC-ACCACguugcgGCCCC--AGCGGUUg -3' miRNA: 3'- -GAUGaUGGUGa-----UGGGGcuUCGCCGAg -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 15514 | 0.66 | 0.546047 |
Target: 5'- aUGCagACCACgggggACCCCGuGGCGGa-- -3' miRNA: 3'- gAUGa-UGGUGa----UGGGGCuUCGCCgag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 3703 | 0.66 | 0.5349 |
Target: 5'- gCUGCUGCCGCaGCUCCGccAGCGcCUg -3' miRNA: 3'- -GAUGAUGGUGaUGGGGCu-UCGCcGAg -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 3595 | 0.67 | 0.523834 |
Target: 5'- gCUGCUGCUguuGCUGCUgaaCGAAGCGGg-- -3' miRNA: 3'- -GAUGAUGG---UGAUGGg--GCUUCGCCgag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 31766 | 0.67 | 0.512857 |
Target: 5'- ----cACCAcCUGCCCCGc-GCGGCa- -3' miRNA: 3'- gaugaUGGU-GAUGGGGCuuCGCCGag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 23668 | 0.67 | 0.495496 |
Target: 5'- -cGCUGCCACUucuGCuCCUGAgcauccagcugcagcAGCGGC-Cg -3' miRNA: 3'- gaUGAUGGUGA---UG-GGGCU---------------UCGCCGaG- -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 17532 | 0.67 | 0.491197 |
Target: 5'- -gGCgucGCCGCcgUACCCCGGuGGCGGUg- -3' miRNA: 3'- gaUGa--UGGUG--AUGGGGCU-UCGCCGag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 28524 | 0.68 | 0.459534 |
Target: 5'- -aAC-ACCAUcuCCUCGAAGCGGCa- -3' miRNA: 3'- gaUGaUGGUGauGGGGCUUCGCCGag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 2602 | 0.69 | 0.399673 |
Target: 5'- cCUGCUACaaggCGCUggACCaCCgGggGCGGCUg -3' miRNA: 3'- -GAUGAUG----GUGA--UGG-GG-CuuCGCCGAg -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 9342 | 0.69 | 0.379929 |
Target: 5'- uCUGCUGCUGCUGCCuCCGcggggacGGGgGGCg- -3' miRNA: 3'- -GAUGAUGGUGAUGG-GGC-------UUCgCCGag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 18792 | 0.7 | 0.362636 |
Target: 5'- -gGCguccgGCCGCgGCUCCGGccGCGGCUCc -3' miRNA: 3'- gaUGa----UGGUGaUGGGGCUu-CGCCGAG- -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 24625 | 0.7 | 0.361741 |
Target: 5'- -aGCUGCCGCgccaaccGCCCaCGAgccgacgcgcacuGGCGGCUg -3' miRNA: 3'- gaUGAUGGUGa------UGGG-GCU-------------UCGCCGAg -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 24187 | 0.7 | 0.353757 |
Target: 5'- cCUGCUGCCGCUGCUgCagugaAGGUGGCg- -3' miRNA: 3'- -GAUGAUGGUGAUGGgGc----UUCGCCGag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 25398 | 0.7 | 0.336463 |
Target: 5'- aCUGCUGCCAg-ACCCCcauGGCGGUc- -3' miRNA: 3'- -GAUGAUGGUgaUGGGGcu-UCGCCGag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 24455 | 0.71 | 0.311695 |
Target: 5'- -aGCUcaGCCGCcGCCUgGAAGCGGCc- -3' miRNA: 3'- gaUGA--UGGUGaUGGGgCUUCGCCGag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 32107 | 0.71 | 0.288337 |
Target: 5'- aCUGCUGCCGCUGCgCCaccAGCuccaucGGCUCc -3' miRNA: 3'- -GAUGAUGGUGAUGgGGcu-UCG------CCGAG- -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 17890 | 0.72 | 0.266376 |
Target: 5'- cCUGCcGCCGCUGCgCCGAGGCGccacGCg- -3' miRNA: 3'- -GAUGaUGGUGAUGgGGCUUCGC----CGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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