miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27445 3' -56.3 NC_005869.1 + 17637 0.66 0.525614
Target:  5'- gCAGCCgaGGGC---GGGGGACCgccgcugcgggcggGCGGCg -3'
miRNA:   3'- -GUUGG--UCCGguaCCUCUUGGa-------------CGCCG- -5'
27445 3' -56.3 NC_005869.1 + 12077 0.66 0.510361
Target:  5'- gGACC-GGCUGUcccAGGACgUGCGGCa -3'
miRNA:   3'- gUUGGuCCGGUAcc-UCUUGgACGCCG- -5'
27445 3' -56.3 NC_005869.1 + 16363 0.66 0.510361
Target:  5'- gCGACCGcuuGCCAUaGGAGAACUcauuggaGCGGUc -3'
miRNA:   3'- -GUUGGUc--CGGUA-CCUCUUGGa------CGCCG- -5'
27445 3' -56.3 NC_005869.1 + 14815 0.66 0.510361
Target:  5'- aCAcCCAGGCCGUGuacucccAGcuCCUGCaGCa -3'
miRNA:   3'- -GUuGGUCCGGUACc------UCuuGGACGcCG- -5'
27445 3' -56.3 NC_005869.1 + 11061 0.66 0.510361
Target:  5'- gAGCCGGGacgaggugaCCAUGGGacuGAugcACCUGUGGg -3'
miRNA:   3'- gUUGGUCC---------GGUACCU---CU---UGGACGCCg -5'
27445 3' -56.3 NC_005869.1 + 11436 0.66 0.499579
Target:  5'- gCGGCUGGaGCgCGUGGucAGcACCUcGCGGCg -3'
miRNA:   3'- -GUUGGUC-CG-GUACC--UCuUGGA-CGCCG- -5'
27445 3' -56.3 NC_005869.1 + 18815 0.66 0.499579
Target:  5'- gAGCCgcggGGGCCggGGcgGGGGCg-GCGGCg -3'
miRNA:   3'- gUUGG----UCCGGuaCC--UCUUGgaCGCCG- -5'
27445 3' -56.3 NC_005869.1 + 17485 0.66 0.499579
Target:  5'- -cGCCGGGCCAcc-GGAACCaccGgGGCg -3'
miRNA:   3'- guUGGUCCGGUaccUCUUGGa--CgCCG- -5'
27445 3' -56.3 NC_005869.1 + 6453 0.66 0.497435
Target:  5'- cCAGCCAcGGUUGUGGAGGgugACCacguccacggagGUGGCu -3'
miRNA:   3'- -GUUGGU-CCGGUACCUCU---UGGa-----------CGCCG- -5'
27445 3' -56.3 NC_005869.1 + 29289 0.66 0.4889
Target:  5'- aGACCGGGacCCAgggacagGGAGAuGCCcucgGCGGUc -3'
miRNA:   3'- gUUGGUCC--GGUa------CCUCU-UGGa---CGCCG- -5'
27445 3' -56.3 NC_005869.1 + 24535 0.66 0.4889
Target:  5'- gCGGCguGGCgGgGGAGAagaggGCCgcuuccagGCGGCg -3'
miRNA:   3'- -GUUGguCCGgUaCCUCU-----UGGa-------CGCCG- -5'
27445 3' -56.3 NC_005869.1 + 3642 0.66 0.478329
Target:  5'- ---gCAGGCgcUGGcGGAgCUGCGGCa -3'
miRNA:   3'- guugGUCCGguACCuCUUgGACGCCG- -5'
27445 3' -56.3 NC_005869.1 + 21038 0.66 0.478329
Target:  5'- gCAACUGGGCCGccuuccgcggcUGGAGcuUCacGCGGCu -3'
miRNA:   3'- -GUUGGUCCGGU-----------ACCUCuuGGa-CGCCG- -5'
27445 3' -56.3 NC_005869.1 + 5622 0.66 0.478329
Target:  5'- cCAGCCAGGUgAgcUGGGGGuUCUGgGGa -3'
miRNA:   3'- -GUUGGUCCGgU--ACCUCUuGGACgCCg -5'
27445 3' -56.3 NC_005869.1 + 9948 0.66 0.478329
Target:  5'- uCGGCCAccacgcgcucGGCCA-GGAuGGCCUGCGcauGCg -3'
miRNA:   3'- -GUUGGU----------CCGGUaCCUcUUGGACGC---CG- -5'
27445 3' -56.3 NC_005869.1 + 2070 0.66 0.478329
Target:  5'- -cGCCGccGGCCcgGGGGAGCggGUGGa -3'
miRNA:   3'- guUGGU--CCGGuaCCUCUUGgaCGCCg -5'
27445 3' -56.3 NC_005869.1 + 16245 0.66 0.478329
Target:  5'- uGACgAGGUCGUGGcAGAcagugacauCCUGCaGCa -3'
miRNA:   3'- gUUGgUCCGGUACC-UCUu--------GGACGcCG- -5'
27445 3' -56.3 NC_005869.1 + 16552 0.66 0.467871
Target:  5'- gGGCCAGGaCCugcacgGUGG-GGACCagugagGCGGUg -3'
miRNA:   3'- gUUGGUCC-GG------UACCuCUUGGa-----CGCCG- -5'
27445 3' -56.3 NC_005869.1 + 13233 0.67 0.461654
Target:  5'- cCAGCCuGGCCAgcggcgccgacagccUGGAGugggacGCgCUGCuGGCc -3'
miRNA:   3'- -GUUGGuCCGGU---------------ACCUCu-----UG-GACG-CCG- -5'
27445 3' -56.3 NC_005869.1 + 22374 0.67 0.454455
Target:  5'- gGAUugUAGGCCAUGGGGcugucgggguagcgGGCaaagGCGGCg -3'
miRNA:   3'- gUUG--GUCCGGUACCUC--------------UUGga--CGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.