miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27462 5' -63.1 NC_005869.1 + 30389 0.66 0.23761
Target:  5'- gCAGCUGCugccGCAGCuccGCCaGcGCCuGCCg -3'
miRNA:   3'- gGUCGACGu---CGUCGc--CGGcC-CGG-UGG- -5'
27462 5' -63.1 NC_005869.1 + 1623 0.67 0.182854
Target:  5'- gCAGCUgGCAGCGgugaagguGCGGgaGGGCUAUg -3'
miRNA:   3'- gGUCGA-CGUCGU--------CGCCggCCCGGUGg -5'
27462 5' -63.1 NC_005869.1 + 22810 0.67 0.182854
Target:  5'- aCCAGgUccacCAGcCAGCGGCucuCGGGCgCGCCc -3'
miRNA:   3'- -GGUCgAc---GUC-GUCGCCG---GCCCG-GUGG- -5'
27462 5' -63.1 NC_005869.1 + 26424 0.81 0.016766
Target:  5'- cCCAGCUGCGGCGccGCcGCCugcgcGGGCCGCCc -3'
miRNA:   3'- -GGUCGACGUCGU--CGcCGG-----CCCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 17486 0.66 0.231569
Target:  5'- gCGGCgugGguGCuggAGCGGgCGGcuCCACCa -3'
miRNA:   3'- gGUCGa--CguCG---UCGCCgGCCc-GGUGG- -5'
27462 5' -63.1 NC_005869.1 + 20605 0.66 0.225657
Target:  5'- gCGGCUgGUGGCGGCGGgaGaagcuGGCCACg -3'
miRNA:   3'- gGUCGA-CGUCGUCGCCggC-----CCGGUGg -5'
27462 5' -63.1 NC_005869.1 + 18675 0.66 0.219874
Target:  5'- gCGGC-GcCGGCGGCGGgUGGcGCCGgCg -3'
miRNA:   3'- gGUCGaC-GUCGUCGCCgGCC-CGGUgG- -5'
27462 5' -63.1 NC_005869.1 + 30838 0.67 0.208687
Target:  5'- cCCAGUUGCAGCucaccAG-GGaCCGGGggGCCc -3'
miRNA:   3'- -GGUCGACGUCG-----UCgCC-GGCCCggUGG- -5'
27462 5' -63.1 NC_005869.1 + 11832 0.67 0.20328
Target:  5'- aCgAGCgUGaGGCAGCGGuCCGGGgUGCUc -3'
miRNA:   3'- -GgUCG-ACgUCGUCGCC-GGCCCgGUGG- -5'
27462 5' -63.1 NC_005869.1 + 21664 0.67 0.191304
Target:  5'- cCCGcGCUcccCAGCGGgGGCCugcagcccccacagGGGCCGCa -3'
miRNA:   3'- -GGU-CGAc--GUCGUCgCCGG--------------CCCGGUGg -5'
27462 5' -63.1 NC_005869.1 + 24070 0.67 0.197473
Target:  5'- gCAGCgcaUGCAGCAGgccauccUGGCCGagcgcgugguGGCCgACCu -3'
miRNA:   3'- gGUCG---ACGUCGUC-------GCCGGC----------CCGG-UGG- -5'
27462 5' -63.1 NC_005869.1 + 25717 0.67 0.20328
Target:  5'- cCCAGaCcGCGGUggAGCuGGCCcGcGCCGCCg -3'
miRNA:   3'- -GGUC-GaCGUCG--UCG-CCGGcC-CGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 15335 0.66 0.23761
Target:  5'- -gAGCgGCGGCGGgGGgCgcaucuuauuguGGGCCACg -3'
miRNA:   3'- ggUCGaCGUCGUCgCCgG------------CCCGGUGg -5'
27462 5' -63.1 NC_005869.1 + 1739 0.67 0.196433
Target:  5'- aCCuGCUGgGGgAGUugagcgagcgcacgGGCCGGG-CACCu -3'
miRNA:   3'- -GGuCGACgUCgUCG--------------CCGGCCCgGUGG- -5'
27462 5' -63.1 NC_005869.1 + 8182 0.66 0.23761
Target:  5'- -gGGCgGUGGCAGgGuGCCgucgggcuugggGGGCCGCUg -3'
miRNA:   3'- ggUCGaCGUCGUCgC-CGG------------CCCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 19082 0.67 0.20328
Target:  5'- --cGCaGCGGCAGCGuGCCGuGGuCCGUCa -3'
miRNA:   3'- gguCGaCGUCGUCGC-CGGC-CC-GGUGG- -5'
27462 5' -63.1 NC_005869.1 + 21879 0.67 0.19232
Target:  5'- gCAGCgagGCgaugaaggcauucAGC-GCGGCCaGGCUGCCc -3'
miRNA:   3'- gGUCGa--CG-------------UCGuCGCCGGcCCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 26174 0.67 0.182854
Target:  5'- gCCGcGCUGCAgGUGGUGGCCGuccagaGcCCGCCu -3'
miRNA:   3'- -GGU-CGACGU-CGUCGCCGGCc-----C-GGUGG- -5'
27462 5' -63.1 NC_005869.1 + 17834 0.66 0.231569
Target:  5'- uCCGGCcGCGggacGCGGgGGUcggcgaggggCGGGcCCGCCg -3'
miRNA:   3'- -GGUCGaCGU----CGUCgCCG----------GCCC-GGUGG- -5'
27462 5' -63.1 NC_005869.1 + 24521 0.66 0.223328
Target:  5'- cUCAGcCUGCcccucuGCAGCGGCaccgcgcugcgcgGGGgCGCCu -3'
miRNA:   3'- -GGUC-GACGu-----CGUCGCCGg------------CCCgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.