miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27464 3' -64 NC_005869.1 + 29211 0.66 0.230396
Target:  5'- uCACCcugACCGCCGagggCAUCUCCcuguCCCugGg -3'
miRNA:   3'- -GUGG---UGGCGGCg---GUGGAGGc---GGGugC- -5'
27464 3' -64 NC_005869.1 + 10611 0.66 0.230396
Target:  5'- uGCgGCagaugaaGCCGCCgGCCggCGCCCugGg -3'
miRNA:   3'- gUGgUGg------CGGCGG-UGGagGCGGGugC- -5'
27464 3' -64 NC_005869.1 + 23783 0.66 0.229809
Target:  5'- cUACCACCGCCucauGCUcaugaACCUcuccccccgccaaCCGgCCACGg -3'
miRNA:   3'- -GUGGUGGCGG----CGG-----UGGA-------------GGCgGGUGC- -5'
27464 3' -64 NC_005869.1 + 26262 0.66 0.224584
Target:  5'- gCGCCAUCgGCCG-CGCCUUCaagGCCCuGCGg -3'
miRNA:   3'- -GUGGUGG-CGGCgGUGGAGG---CGGG-UGC- -5'
27464 3' -64 NC_005869.1 + 15145 0.66 0.224584
Target:  5'- aGCC-CCGCCaugGCCAuCCUCgucuCGCCCAg- -3'
miRNA:   3'- gUGGuGGCGG---CGGU-GGAG----GCGGGUgc -5'
27464 3' -64 NC_005869.1 + 23794 0.66 0.224584
Target:  5'- gGCCgcGCCGUCGCCGCUgCCGUCUc-- -3'
miRNA:   3'- gUGG--UGGCGGCGGUGGaGGCGGGugc -5'
27464 3' -64 NC_005869.1 + 17488 0.66 0.218897
Target:  5'- aGCC-CCGCgcgCGCCGCgUgCGCCuCGCGc -3'
miRNA:   3'- gUGGuGGCG---GCGGUGgAgGCGG-GUGC- -5'
27464 3' -64 NC_005869.1 + 32417 0.66 0.218897
Target:  5'- gCACCuucACCGCUGCCAgCUgcaCgCGCUCAUGu -3'
miRNA:   3'- -GUGG---UGGCGGCGGUgGA---G-GCGGGUGC- -5'
27464 3' -64 NC_005869.1 + 22203 0.66 0.218897
Target:  5'- gCACC-CCGgaCCGCUGCCUCaCGCUCGu- -3'
miRNA:   3'- -GUGGuGGC--GGCGGUGGAG-GCGGGUgc -5'
27464 3' -64 NC_005869.1 + 16564 0.66 0.218897
Target:  5'- gCACC-CaCGCCGCC-CCUagcCCCGCGg -3'
miRNA:   3'- -GUGGuG-GCGGCGGuGGAggcGGGUGC- -5'
27464 3' -64 NC_005869.1 + 24241 0.66 0.218897
Target:  5'- gGgCAUgGCCGaCCGCaUCCGCCUGCa -3'
miRNA:   3'- gUgGUGgCGGC-GGUGgAGGCGGGUGc -5'
27464 3' -64 NC_005869.1 + 27239 0.66 0.213334
Target:  5'- uUAUCACCGagaCGCCACgCcCCGUCCAa- -3'
miRNA:   3'- -GUGGUGGCg--GCGGUG-GaGGCGGGUgc -5'
27464 3' -64 NC_005869.1 + 18582 0.66 0.213334
Target:  5'- gGCUACCGCCuCCACCgcgUUGaCCACa -3'
miRNA:   3'- gUGGUGGCGGcGGUGGa--GGCgGGUGc -5'
27464 3' -64 NC_005869.1 + 27772 0.66 0.213334
Target:  5'- cCAgCACCGCCGCCAgugcCCUaaCCGCUg--- -3'
miRNA:   3'- -GUgGUGGCGGCGGU----GGA--GGCGGgugc -5'
27464 3' -64 NC_005869.1 + 9342 0.66 0.213334
Target:  5'- -uCUGCUGCUGCUGCCUCCGCggggACGg -3'
miRNA:   3'- guGGUGGCGGCGGUGGAGGCGgg--UGC- -5'
27464 3' -64 NC_005869.1 + 15660 0.66 0.211688
Target:  5'- uGCUGCUGCCGCagcugcugcuguugCACCggCgGUCCACGg -3'
miRNA:   3'- gUGGUGGCGGCG--------------GUGGa-GgCGGGUGC- -5'
27464 3' -64 NC_005869.1 + 8501 0.66 0.207892
Target:  5'- aGCCcCCGCgUGCCgGCCUCCGCggCCuCGg -3'
miRNA:   3'- gUGGuGGCG-GCGG-UGGAGGCG--GGuGC- -5'
27464 3' -64 NC_005869.1 + 16774 0.66 0.207892
Target:  5'- aGCCuccCCGUCuCCAUCaugCCGCCCACc -3'
miRNA:   3'- gUGGu--GGCGGcGGUGGa--GGCGGGUGc -5'
27464 3' -64 NC_005869.1 + 18715 0.66 0.207892
Target:  5'- -cCCGCCGCCGCuCACCaCCa-CCACc -3'
miRNA:   3'- guGGUGGCGGCG-GUGGaGGcgGGUGc -5'
27464 3' -64 NC_005869.1 + 24460 0.66 0.202571
Target:  5'- aGCCGCCGCCuggaagcgGCCcucuUCUCC-CCCGCc -3'
miRNA:   3'- gUGGUGGCGG--------CGGu---GGAGGcGGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.