miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27464 5' -58.6 NC_005869.1 + 26842 0.66 0.355417
Target:  5'- -aCGCUGUacgccaucuuccAGCAgagccGCGGCGGcCAGGAcGCc -3'
miRNA:   3'- aaGUGACG------------UCGU-----CGCCGUC-GUCCU-CG- -5'
27464 5' -58.6 NC_005869.1 + 25535 0.66 0.355417
Target:  5'- --gGCcGCGGaGGcCGGCAcGCGGGGGCu -3'
miRNA:   3'- aagUGaCGUCgUC-GCCGU-CGUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 9702 0.66 0.355417
Target:  5'- -gCGCUGCAGCAcguccGCGuccauGUAGCGGucGGGCg -3'
miRNA:   3'- aaGUGACGUCGU-----CGC-----CGUCGUC--CUCG- -5'
27464 5' -58.6 NC_005869.1 + 23027 0.66 0.34667
Target:  5'- --aGCcGCAGUcgcacaccAGCGGCaucAGCAGGuGCg -3'
miRNA:   3'- aagUGaCGUCG--------UCGCCG---UCGUCCuCG- -5'
27464 5' -58.6 NC_005869.1 + 19074 0.66 0.34667
Target:  5'- --uGCUGUuacGCAGCGGCAGCGu--GCc -3'
miRNA:   3'- aagUGACGu--CGUCGCCGUCGUccuCG- -5'
27464 5' -58.6 NC_005869.1 + 6723 0.66 0.338078
Target:  5'- -aCGCgGCAGguGCaGGUGGguGG-GCg -3'
miRNA:   3'- aaGUGaCGUCguCG-CCGUCguCCuCG- -5'
27464 5' -58.6 NC_005869.1 + 9915 0.66 0.338078
Target:  5'- -cCGCUGCuGCAGUgaaGGUGGCGGugacguGGGCg -3'
miRNA:   3'- aaGUGACGuCGUCG---CCGUCGUC------CUCG- -5'
27464 5' -58.6 NC_005869.1 + 17472 0.66 0.329641
Target:  5'- -cCGCggggcuagggGCGGC-GUGGguGCuGGAGCg -3'
miRNA:   3'- aaGUGa---------CGUCGuCGCCguCGuCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 2630 0.66 0.321361
Target:  5'- aUCGggGC-GCAGCGGCGG-GGGAGg -3'
miRNA:   3'- aAGUgaCGuCGUCGCCGUCgUCCUCg -5'
27464 5' -58.6 NC_005869.1 + 8472 0.66 0.321361
Target:  5'- --gGCggaggGUGGC-GCGGCgcucgAGCAGGAGCc -3'
miRNA:   3'- aagUGa----CGUCGuCGCCG-----UCGUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 12231 0.66 0.321361
Target:  5'- -gCGCUGCGGCuGCuGGUgAGCgAGGuGCc -3'
miRNA:   3'- aaGUGACGUCGuCG-CCG-UCG-UCCuCG- -5'
27464 5' -58.6 NC_005869.1 + 15521 0.66 0.321361
Target:  5'- -gCGC-GCGGgAGUGGCcgaGGCAGGcGGCg -3'
miRNA:   3'- aaGUGaCGUCgUCGCCG---UCGUCC-UCG- -5'
27464 5' -58.6 NC_005869.1 + 10653 0.67 0.305271
Target:  5'- cUgGCaGCAccGCAGCGGCucGgAGGGGCu -3'
miRNA:   3'- aAgUGaCGU--CGUCGCCGu-CgUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 1856 0.67 0.302911
Target:  5'- -gCGgaGCAGguGCGGCAGgggcugugcaucauCAGGAuGCc -3'
miRNA:   3'- aaGUgaCGUCguCGCCGUC--------------GUCCU-CG- -5'
27464 5' -58.6 NC_005869.1 + 16526 0.67 0.29746
Target:  5'- gUCGuCUGCAGgaGGUGGUGGU-GGAGCc -3'
miRNA:   3'- aAGU-GACGUCg-UCGCCGUCGuCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 6256 0.67 0.29746
Target:  5'- --aGCaGCAGCgguuagggcacuGGCGGCGGUgcuggucgAGGAGCu -3'
miRNA:   3'- aagUGaCGUCG------------UCGCCGUCG--------UCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 15920 0.67 0.289805
Target:  5'- -cCGCUGaagaAGCGGCgcaaGGCcaAGCGGGGGUu -3'
miRNA:   3'- aaGUGACg---UCGUCG----CCG--UCGUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 15328 0.67 0.289805
Target:  5'- --uGgUGguG-AGCGGCGGCGGGGGg -3'
miRNA:   3'- aagUgACguCgUCGCCGUCGUCCUCg -5'
27464 5' -58.6 NC_005869.1 + 11445 0.67 0.282306
Target:  5'- -gCGCgugGuCAGCAccucGCGGCGGCGcGAGCu -3'
miRNA:   3'- aaGUGa--C-GUCGU----CGCCGUCGUcCUCG- -5'
27464 5' -58.6 NC_005869.1 + 5713 0.67 0.282306
Target:  5'- -gCAC-GUAGCGGCGGUAGUagAGGAu- -3'
miRNA:   3'- aaGUGaCGUCGUCGCCGUCG--UCCUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.