Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27470 | 3' | -54.6 | NC_005869.1 | + | 33563 | 0.67 | 0.460858 |
Target: 5'- gUCa-GCACC-GCGGcCAGCAGCAGUc -3' miRNA: 3'- gAGgaUGUGGuUGUC-GUCGUCGUCGu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 27578 | 0.71 | 0.30212 |
Target: 5'- uUCCccGCAgCGGCGGCAuCGGCAGCGa -3' miRNA: 3'- gAGGa-UGUgGUUGUCGUcGUCGUCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 26998 | 0.68 | 0.419554 |
Target: 5'- --aCUGCGCU--CGGCAGCGGCAGa- -3' miRNA: 3'- gagGAUGUGGuuGUCGUCGUCGUCgu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 26768 | 0.8 | 0.072881 |
Target: 5'- uCUCCaggaAgGCCGcaGCAGCGGCGGCAGCAg -3' miRNA: 3'- -GAGGa---UgUGGU--UGUCGUCGUCGUCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 26470 | 1.09 | 0.000451 |
Target: 5'- cCUCCUACACCAACAGCAGCAGCAGCAa -3' miRNA: 3'- -GAGGAUGUGGUUGUCGUCGUCGUCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 26178 | 0.79 | 0.07988 |
Target: 5'- aUCCgcagcaGCACCAGCAcCAGCAGCAGCc -3' miRNA: 3'- gAGGa-----UGUGGUUGUcGUCGUCGUCGu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 26087 | 0.67 | 0.459799 |
Target: 5'- -aCCUACACCuggcACGGCcGCuucggaaAGCAGCu -3' miRNA: 3'- gaGGAUGUGGu---UGUCGuCG-------UCGUCGu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 24682 | 0.79 | 0.080861 |
Target: 5'- -gCCUGCGCCccccguccccgcggaGGCAGCAGCAGCAGa- -3' miRNA: 3'- gaGGAUGUGG---------------UUGUCGUCGUCGUCgu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 24382 | 0.66 | 0.549242 |
Target: 5'- aUCCUGCGCCAgguccuGCAGgaggccgccccCGGC-GCAGCc -3' miRNA: 3'- gAGGAUGUGGU------UGUC-----------GUCGuCGUCGu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 24292 | 0.69 | 0.390089 |
Target: 5'- cCUCCUgcGCGCCAucCGGCAGCucaAGaCGGCc -3' miRNA: 3'- -GAGGA--UGUGGUu-GUCGUCG---UC-GUCGu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 24109 | 0.81 | 0.053565 |
Target: 5'- cCUCCgcccacguCACCGccaccuucacuGCAGCAGCGGCAGCAg -3' miRNA: 3'- -GAGGau------GUGGU-----------UGUCGUCGUCGUCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 23879 | 0.68 | 0.43993 |
Target: 5'- gCUCCUGCACgGGCGGagaGGCcGCGcGCu -3' miRNA: 3'- -GAGGAUGUGgUUGUCg--UCGuCGU-CGu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 23681 | 0.83 | 0.043105 |
Target: 5'- gCUCCUgaGCAuCCAGCuGCAGCAGCGGCc -3' miRNA: 3'- -GAGGA--UGU-GGUUGuCGUCGUCGUCGu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 23579 | 0.66 | 0.560705 |
Target: 5'- aCUCCagggUGCuGCCGucCGGCAGCAGCGuCAg -3' miRNA: 3'- -GAGG----AUG-UGGUu-GUCGUCGUCGUcGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 23034 | 0.71 | 0.264209 |
Target: 5'- gUCgcACACCAGCGGCaucAGCAGguGCGu -3' miRNA: 3'- gAGgaUGUGGUUGUCG---UCGUCguCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 22981 | 0.69 | 0.39976 |
Target: 5'- aUCUUGCAggucugccggcCCAGCAGgGGCaccuGGCGGCAg -3' miRNA: 3'- gAGGAUGU-----------GGUUGUCgUCG----UCGUCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 22887 | 0.72 | 0.23025 |
Target: 5'- gUgCUGCGCgAuCAGCAGCAGCuGCGc -3' miRNA: 3'- gAgGAUGUGgUuGUCGUCGUCGuCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 22778 | 0.71 | 0.281904 |
Target: 5'- gCUCCUGCACCAcaauggucuggaGCAGguucaccagguccacCAGCcAGCGGCu -3' miRNA: 3'- -GAGGAUGUGGU------------UGUC---------------GUCG-UCGUCGu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 21807 | 0.73 | 0.2058 |
Target: 5'- cCUCgCU-CACCAGCAGCcGCAGCGcGCu -3' miRNA: 3'- -GAG-GAuGUGGUUGUCGuCGUCGU-CGu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 21597 | 0.79 | 0.077007 |
Target: 5'- cCUCCgcgaagggagcCACCAGgAGCAGCAGCAGCc -3' miRNA: 3'- -GAGGau---------GUGGUUgUCGUCGUCGUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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