miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27470 3' -54.6 NC_005869.1 + 21372 0.66 0.576858
Target:  5'- cCUCCUcggcggucagggcauACGCCGcCGGCAGCcGCcGCu -3'
miRNA:   3'- -GAGGA---------------UGUGGUuGUCGUCGuCGuCGu -5'
27470 3' -54.6 NC_005869.1 + 8289 0.7 0.335369
Target:  5'- ---gUGCGCagagguuGCAGCGGCAGUAGCAc -3'
miRNA:   3'- gaggAUGUGgu-----UGUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 9545 0.71 0.264209
Target:  5'- uCUCCUgGCGCC-GCGGCGGC-GUGGCGg -3'
miRNA:   3'- -GAGGA-UGUGGuUGUCGUCGuCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 21597 0.79 0.077007
Target:  5'- cCUCCgcgaagggagcCACCAGgAGCAGCAGCAGCc -3'
miRNA:   3'- -GAGGau---------GUGGUUgUCGUCGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 1601 0.67 0.493202
Target:  5'- aCUCCcagcgACAUgAGCGcguGCAGCuGGCAGCGg -3'
miRNA:   3'- -GAGGa----UGUGgUUGU---CGUCG-UCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 9605 0.67 0.493202
Target:  5'- gCUCCgcCACCGAgGGCGccuCGGCGGCc -3'
miRNA:   3'- -GAGGauGUGGUUgUCGUc--GUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 5689 0.67 0.486648
Target:  5'- --gCUGCacgaugagggcggugGCCAGCAcGUAGCGGCGGUAg -3'
miRNA:   3'- gagGAUG---------------UGGUUGU-CGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 17378 0.67 0.470446
Target:  5'- gCUCCaGCGCC-GCGGCcgcgcugAGCuGCGGCGc -3'
miRNA:   3'- -GAGGaUGUGGuUGUCG-------UCGuCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 9905 0.68 0.43993
Target:  5'- gCUCCUGCuGCCGcuGCuGCAGUgaaGGUGGCGg -3'
miRNA:   3'- -GAGGAUG-UGGU--UGuCGUCG---UCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 24292 0.69 0.390089
Target:  5'- cCUCCUgcGCGCCAucCGGCAGCucaAGaCGGCc -3'
miRNA:   3'- -GAGGA--UGUGGUu-GUCGUCG---UC-GUCGu -5'
27470 3' -54.6 NC_005869.1 + 10636 0.68 0.409582
Target:  5'- -cCCUGCGggugcgugauCUGGCAGCAccGCAGCGGCu -3'
miRNA:   3'- gaGGAUGU----------GGUUGUCGU--CGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 19059 0.68 0.450327
Target:  5'- --gCUGCACCccggggauGCuguuacGCAGCGGCAGCGu -3'
miRNA:   3'- gagGAUGUGGu-------UGu-----CGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 9632 0.66 0.572232
Target:  5'- cCUCCgcggcUGCGCCGGgGGCGGCcuccuGCAGg- -3'
miRNA:   3'- -GAGG-----AUGUGGUUgUCGUCGu----CGUCgu -5'
27470 3' -54.6 NC_005869.1 + 20701 0.69 0.403671
Target:  5'- cCUCCUccagggaggagcgggAgGCgCGGCGGCGGCGGcCGGCGg -3'
miRNA:   3'- -GAGGA---------------UgUG-GUUGUCGUCGUC-GUCGU- -5'
27470 3' -54.6 NC_005869.1 + 18657 0.66 0.549242
Target:  5'- cCUCCgACGUCGACgauGGCGGCgccGGCGGCGg -3'
miRNA:   3'- -GAGGaUGUGGUUG---UCGUCG---UCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 26087 0.67 0.459799
Target:  5'- -aCCUACACCuggcACGGCcGCuucggaaAGCAGCu -3'
miRNA:   3'- gaGGAUGUGGu---UGUCGuCG-------UCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 7404 0.69 0.39976
Target:  5'- aCUCCaGgGCCGAgaggaugucgUGGCGGUAGCGGCGc -3'
miRNA:   3'- -GAGGaUgUGGUU----------GUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 22778 0.71 0.281904
Target:  5'- gCUCCUGCACCAcaauggucuggaGCAGguucaccagguccacCAGCcAGCGGCu -3'
miRNA:   3'- -GAGGAUGUGGU------------UGUC---------------GUCG-UCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 13285 0.66 0.537854
Target:  5'- aCUCgUAgguguagguCGCCccCGGCAGgAGCAGCAg -3'
miRNA:   3'- -GAGgAU---------GUGGuuGUCGUCgUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 1832 0.67 0.48992
Target:  5'- aCUCCUGaugACCGcagacgagcaugauGgAGCAGCGGCAGgAg -3'
miRNA:   3'- -GAGGAUg--UGGU--------------UgUCGUCGUCGUCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.