miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27471 3' -61.1 NC_005869.1 + 26363 0.66 0.279396
Target:  5'- gAGCuGGCGcaGgAGCGGGGCCccGGCCUGCc -3'
miRNA:   3'- gUCG-CCGC--CgUCGUCUUGG--UCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 26482 0.66 0.279396
Target:  5'- aCAGCaGCaGCAGCaAGAGCauCAGCCaGCg -3'
miRNA:   3'- -GUCGcCGcCGUCG-UCUUG--GUCGGgUG- -5'
27471 3' -61.1 NC_005869.1 + 6115 0.66 0.279396
Target:  5'- -cGCGGUGGCGGCGGucGCUguAGCgCGu -3'
miRNA:   3'- guCGCCGCCGUCGUCu-UGG--UCGgGUg -5'
27471 3' -61.1 NC_005869.1 + 12819 0.66 0.279396
Target:  5'- gAGCaGGCGGUcauuGCccGGCCAGgCCACg -3'
miRNA:   3'- gUCG-CCGCCGu---CGucUUGGUCgGGUG- -5'
27471 3' -61.1 NC_005869.1 + 17093 0.66 0.279396
Target:  5'- gGGCGGUGGUGGCccGGAGCacgGGCauggCCACc -3'
miRNA:   3'- gUCGCCGCCGUCG--UCUUGg--UCG----GGUG- -5'
27471 3' -61.1 NC_005869.1 + 9927 0.66 0.272308
Target:  5'- aGGgGGC-GCAGCAGcGCCAGgucggccaCCACg -3'
miRNA:   3'- gUCgCCGcCGUCGUCuUGGUCg-------GGUG- -5'
27471 3' -61.1 NC_005869.1 + 17484 0.66 0.272308
Target:  5'- gGGCGGCguGGguGCuGGAGCgggCGGCuCCACc -3'
miRNA:   3'- gUCGCCG--CCguCG-UCUUG---GUCG-GGUG- -5'
27471 3' -61.1 NC_005869.1 + 9260 0.66 0.265365
Target:  5'- gGGCGGgGGCGuGCuGGGuCCGGCcaCCGCc -3'
miRNA:   3'- gUCGCCgCCGU-CGuCUU-GGUCG--GGUG- -5'
27471 3' -61.1 NC_005869.1 + 9781 0.66 0.265365
Target:  5'- -uGCGGcCGGCgcgcugcaGGCGGAugCGGUCgGCc -3'
miRNA:   3'- guCGCC-GCCG--------UCGUCUugGUCGGgUG- -5'
27471 3' -61.1 NC_005869.1 + 8854 0.66 0.265365
Target:  5'- aCGGUGGCGGCcaggucgacGguGAugCGGUUCAUg -3'
miRNA:   3'- -GUCGCCGCCGu--------CguCUugGUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 17348 0.66 0.265365
Target:  5'- cCGGUGGCaggGGCacGGCGGccGCC-GCCCGCu -3'
miRNA:   3'- -GUCGCCG---CCG--UCGUCu-UGGuCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 2351 0.66 0.264678
Target:  5'- uGGUGGUucagggaGGCGGU-GAACCuGCCCAg -3'
miRNA:   3'- gUCGCCG-------CCGUCGuCUUGGuCGGGUg -5'
27471 3' -61.1 NC_005869.1 + 21627 0.66 0.258566
Target:  5'- gCAGCcggguguugGGCGuCAGCAGGgaggacACguGCCCGCg -3'
miRNA:   3'- -GUCG---------CCGCcGUCGUCU------UGguCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 31980 0.66 0.258566
Target:  5'- gGGcCGGCGGCGaucuaaacCAGAuCCGGCCCu- -3'
miRNA:   3'- gUC-GCCGCCGUc-------GUCUuGGUCGGGug -5'
27471 3' -61.1 NC_005869.1 + 23693 0.66 0.258566
Target:  5'- cCAGCuGCaGCAGCG--GCCGGgCCACc -3'
miRNA:   3'- -GUCGcCGcCGUCGUcuUGGUCgGGUG- -5'
27471 3' -61.1 NC_005869.1 + 10732 0.66 0.25191
Target:  5'- -cGCGGCGGCccccgAGCggcacccacGGGugCAGCUCAa -3'
miRNA:   3'- guCGCCGCCG-----UCG---------UCUugGUCGGGUg -5'
27471 3' -61.1 NC_005869.1 + 7286 0.66 0.25191
Target:  5'- -cGCGGCGGCcuuGCGGAgGCUGGUgUGCg -3'
miRNA:   3'- guCGCCGCCGu--CGUCU-UGGUCGgGUG- -5'
27471 3' -61.1 NC_005869.1 + 12644 0.66 0.249941
Target:  5'- cCGGCaGCGGCGGCu--GCCGGCggcguaugcccugaCCGCc -3'
miRNA:   3'- -GUCGcCGCCGUCGucuUGGUCG--------------GGUG- -5'
27471 3' -61.1 NC_005869.1 + 2942 0.66 0.245396
Target:  5'- gGGCGGCcGCcugGGCAGcuUCAGCCC-Ca -3'
miRNA:   3'- gUCGCCGcCG---UCGUCuuGGUCGGGuG- -5'
27471 3' -61.1 NC_005869.1 + 24437 0.66 0.245396
Target:  5'- aGGCGcccuCGGUGGCGGAGCuCAGCcgCCGCc -3'
miRNA:   3'- gUCGCc---GCCGUCGUCUUG-GUCG--GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.