miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27479 3' -58.6 NC_005869.1 + 22386 0.66 0.432907
Target:  5'- aCGCCGac-GUcCAGC-CCAUCUUCCg -3'
miRNA:   3'- gGCGGCgaaCAcGUCGuGGUGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 22126 0.66 0.432907
Target:  5'- uUCGUgCGCggagGCAcCACCGCCUCCa -3'
miRNA:   3'- -GGCG-GCGaacaCGUcGUGGUGGAGGg -5'
27479 3' -58.6 NC_005869.1 + 30280 0.66 0.431936
Target:  5'- gCGCCG-------GGCGCCACCUCCUc -3'
miRNA:   3'- gGCGGCgaacacgUCGUGGUGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 24496 0.66 0.423256
Target:  5'- aCGCCGCc---GCGGCGCCaggagaacggaACCUgcgcCCCg -3'
miRNA:   3'- gGCGGCGaacaCGUCGUGG-----------UGGA----GGG- -5'
27479 3' -58.6 NC_005869.1 + 15610 0.66 0.423256
Target:  5'- gCGCCGgccaucCUggggGUgcgccGCAGcCGCCGCCUCCg -3'
miRNA:   3'- gGCGGC------GAa---CA-----CGUC-GUGGUGGAGGg -5'
27479 3' -58.6 NC_005869.1 + 23742 0.66 0.423256
Target:  5'- uCCGCCGU-----CGGCAUCGCCuggaugUCCCg -3'
miRNA:   3'- -GGCGGCGaacacGUCGUGGUGG------AGGG- -5'
27479 3' -58.6 NC_005869.1 + 17420 0.66 0.417527
Target:  5'- cCCGCgCGCcccgGUGguuccgguggccCGGCGCCcgcggcgguuccgguGCCUCCCc -3'
miRNA:   3'- -GGCG-GCGaa--CAC------------GUCGUGG---------------UGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 32110 0.66 0.404347
Target:  5'- gCUGCCGC---UGCGcCACCAgCUCCa -3'
miRNA:   3'- -GGCGGCGaacACGUcGUGGUgGAGGg -5'
27479 3' -58.6 NC_005869.1 + 25814 0.66 0.404347
Target:  5'- cCCGCC-CgagGgcccGCcGCcCCGCCUCCCc -3'
miRNA:   3'- -GGCGGcGaa-Ca---CGuCGuGGUGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 1476 0.66 0.404347
Target:  5'- -aGCCGCUcGcUGCuucaAGCucaagauucaGCCACCUCUCu -3'
miRNA:   3'- ggCGGCGAaC-ACG----UCG----------UGGUGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 25722 0.66 0.395095
Target:  5'- aCCGCgGUggagcUG-GCccGCGCCGCCgggCCCa -3'
miRNA:   3'- -GGCGgCGa----ACaCGu-CGUGGUGGa--GGG- -5'
27479 3' -58.6 NC_005869.1 + 12549 0.66 0.391432
Target:  5'- gCCGCUGCUguugaacugguugGUGguGgG-CACCUCCa -3'
miRNA:   3'- -GGCGGCGAa------------CACguCgUgGUGGAGGg -5'
27479 3' -58.6 NC_005869.1 + 26000 0.67 0.377006
Target:  5'- aCgGCCGaCUgGUgGCAGacCAUCGCCUUCCg -3'
miRNA:   3'- -GgCGGC-GAaCA-CGUC--GUGGUGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 15139 0.67 0.377006
Target:  5'- aCGgCGCUugcaUGUGCGGaCACC-CagUCCCa -3'
miRNA:   3'- gGCgGCGA----ACACGUC-GUGGuGg-AGGG- -5'
27479 3' -58.6 NC_005869.1 + 17384 0.67 0.376116
Target:  5'- gCGCCGCggccgcgcUGagcUGCGGCGCCacgacggccugggGCCggCCCg -3'
miRNA:   3'- gGCGGCGa-------AC---ACGUCGUGG-------------UGGa-GGG- -5'
27479 3' -58.6 NC_005869.1 + 13440 0.67 0.368173
Target:  5'- cCCGCCGCcaccaGCcGCGCC-CCggggCCCu -3'
miRNA:   3'- -GGCGGCGaaca-CGuCGUGGuGGa---GGG- -5'
27479 3' -58.6 NC_005869.1 + 27777 0.67 0.368173
Target:  5'- aCCGCCGCcaGUGCccuaaccGCugCugCUUCg -3'
miRNA:   3'- -GGCGGCGaaCACGu------CGugGugGAGGg -5'
27479 3' -58.6 NC_005869.1 + 19253 0.67 0.368173
Target:  5'- gCGCuCGCagcgGcUGCAGCugCGCUucgUCCCc -3'
miRNA:   3'- gGCG-GCGaa--C-ACGUCGugGUGG---AGGG- -5'
27479 3' -58.6 NC_005869.1 + 16836 0.67 0.368173
Target:  5'- aCUGCCGCccgUG-GCGGUgGCCAagagCUCCCu -3'
miRNA:   3'- -GGCGGCGa--ACaCGUCG-UGGUg---GAGGG- -5'
27479 3' -58.6 NC_005869.1 + 30406 0.67 0.368173
Target:  5'- uCCGCCaGCgccUGCcGCAucaugcCCACCUCCg -3'
miRNA:   3'- -GGCGG-CGaacACGuCGU------GGUGGAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.