Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27514 | 5' | -50.4 | NC_005879.1 | + | 14590 | 0.69 | 0.743259 |
Target: 5'- ---uUGGUGUugaGGUCGACCguaccaUUGACGCCc -3' miRNA: 3'- aguuACCACG---UCAGCUGG------AGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 34751 | 0.69 | 0.743259 |
Target: 5'- cUUAAguagGguGUCGACgUCGACACCc -3' miRNA: 3'- -AGUUaccaCguCAGCUGgAGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 29319 | 0.67 | 0.816678 |
Target: 5'- cCAGUaaaaagagGguGUCGACgUCGACACCc -3' miRNA: 3'- aGUUAcca-----CguCAGCUGgAGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 15692 | 0.67 | 0.845151 |
Target: 5'- aCAAUGGUGaauGUCGGCaaggacaAAUACCu -3' miRNA: 3'- aGUUACCACgu-CAGCUGgag----UUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 33228 | 0.66 | 0.862903 |
Target: 5'- -----aGUGU-GUCGACgUCGACACCc -3' miRNA: 3'- aguuacCACGuCAGCUGgAGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 27533 | 0.66 | 0.878773 |
Target: 5'- cCAuUGGUGCAgGUCGAgUUCAggguuuucugcguACGCUc -3' miRNA: 3'- aGUuACCACGU-CAGCUgGAGU-------------UGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 6978 | 0.66 | 0.895121 |
Target: 5'- cCGuUGGUGUuaggguguGUCGACaUCGACACa -3' miRNA: 3'- aGUuACCACGu-------CAGCUGgAGUUGUGg -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 37979 | 0.79 | 0.218533 |
Target: 5'- uUCGG-GGUGU-GUCGACCgUCGACACCa -3' miRNA: 3'- -AGUUaCCACGuCAGCUGG-AGUUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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