miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27569 3' -50.5 NC_005882.1 + 7324 0.66 0.874209
Target:  5'- gGCGAGCUgauUCGCugCGUCGAcCAUUGCg -3'
miRNA:   3'- -CGUUUGGag-AGCG--GCAGCUuGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 25273 0.66 0.857092
Target:  5'- cGCGAuuGCCggcgucgugCUCGCCGUCuGGCuguUCAUc -3'
miRNA:   3'- -CGUU--UGGa--------GAGCGGCAGcUUGu--AGUG- -5'
27569 3' -50.5 NC_005882.1 + 33140 0.66 0.857092
Target:  5'- gGCAAGCCU--UGCCG-CGAGguccgacuuCGUCGCg -3'
miRNA:   3'- -CGUUUGGAgaGCGGCaGCUU---------GUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 25396 0.66 0.856208
Target:  5'- cGCugaauGGCCUCggccgcgUCGCCGaCGAGCugcgCGCg -3'
miRNA:   3'- -CGu----UUGGAG-------AGCGGCaGCUUGua--GUG- -5'
27569 3' -50.5 NC_005882.1 + 16811 0.66 0.838916
Target:  5'- aCGAccGCCUUgUCGCCGUCGcGAUGUCGu -3'
miRNA:   3'- cGUU--UGGAG-AGCGGCAGC-UUGUAGUg -5'
27569 3' -50.5 NC_005882.1 + 30613 0.66 0.838916
Target:  5'- cGUGAACUcggUCUCcgGCaCGUCGAcCGUCACc -3'
miRNA:   3'- -CGUUUGG---AGAG--CG-GCAGCUuGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 28639 0.66 0.838916
Target:  5'- cCAAGCCgccuugCGCCGaUCGGACcgCAUc -3'
miRNA:   3'- cGUUUGGaga---GCGGC-AGCUUGuaGUG- -5'
27569 3' -50.5 NC_005882.1 + 2885 0.66 0.838916
Target:  5'- aCAAGCUUCcccaUCGCCcgaugaucgaaGUCGAAC-UCGCg -3'
miRNA:   3'- cGUUUGGAG----AGCGG-----------CAGCUUGuAGUG- -5'
27569 3' -50.5 NC_005882.1 + 362 0.67 0.829455
Target:  5'- uCAGACUUCUCcgcaGCCGUCGAuguaauGCcgCAg -3'
miRNA:   3'- cGUUUGGAGAG----CGGCAGCU------UGuaGUg -5'
27569 3' -50.5 NC_005882.1 + 2260 0.67 0.819761
Target:  5'- uGCAGGCCg--CGaaGUCGAugAUCGa -3'
miRNA:   3'- -CGUUUGGagaGCggCAGCUugUAGUg -5'
27569 3' -50.5 NC_005882.1 + 12791 0.67 0.819761
Target:  5'- gGCGAACaggUCGCCGgCGAGCGcCGCc -3'
miRNA:   3'- -CGUUUGgagAGCGGCaGCUUGUaGUG- -5'
27569 3' -50.5 NC_005882.1 + 5921 0.67 0.809844
Target:  5'- cGCAGGCCgUUCGCa--CGGGCAUCGg -3'
miRNA:   3'- -CGUUUGGaGAGCGgcaGCUUGUAGUg -5'
27569 3' -50.5 NC_005882.1 + 23261 0.67 0.799718
Target:  5'- cGCGAGCgUCgUGCCGaUCGGcGCAUCGa -3'
miRNA:   3'- -CGUUUGgAGaGCGGC-AGCU-UGUAGUg -5'
27569 3' -50.5 NC_005882.1 + 5668 0.67 0.799718
Target:  5'- ---cGCCgugUUCGCCGauccggcgUCGAGCAUCAg -3'
miRNA:   3'- cguuUGGa--GAGCGGC--------AGCUUGUAGUg -5'
27569 3' -50.5 NC_005882.1 + 34482 0.68 0.778885
Target:  5'- aGCGGGCCgucggCUCgGUCGUCGGAUcgaugCGCa -3'
miRNA:   3'- -CGUUUGGa----GAG-CGGCAGCUUGua---GUG- -5'
27569 3' -50.5 NC_005882.1 + 12119 0.68 0.768205
Target:  5'- uCAuGCC-CUCGaCCGUCGAcuGgAUCGCg -3'
miRNA:   3'- cGUuUGGaGAGC-GGCAGCU--UgUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 28647 0.68 0.757367
Target:  5'- cGCGGGCCagcUCUCGaCGgCGAGCAgCGCg -3'
miRNA:   3'- -CGUUUGG---AGAGCgGCaGCUUGUaGUG- -5'
27569 3' -50.5 NC_005882.1 + 12662 0.68 0.746386
Target:  5'- cGCAGACggCgcgcgcgaUGCCGUCGAACAagCGCg -3'
miRNA:   3'- -CGUUUGgaGa-------GCGGCAGCUUGUa-GUG- -5'
27569 3' -50.5 NC_005882.1 + 15597 0.68 0.735273
Target:  5'- cGCGGACCUgcgCGCCGUacaGGuCAUCAa -3'
miRNA:   3'- -CGUUUGGAga-GCGGCAg--CUuGUAGUg -5'
27569 3' -50.5 NC_005882.1 + 17650 0.69 0.70129
Target:  5'- gGCGGGCCgCUaCGCCGagcaaauggCGAACGUCGa -3'
miRNA:   3'- -CGUUUGGaGA-GCGGCa--------GCUUGUAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.