miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27573 5' -52.3 NC_005882.1 + 29791 0.66 0.788173
Target:  5'- cGCAGC-GUgUC-GCCGCU-CGUCGACu -3'
miRNA:   3'- -CGUUGaCAaAGcCGGUGGuGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 28515 0.66 0.788173
Target:  5'- aGCGGCUugcuugaugUUGGUCAgCACGcUCGACg -3'
miRNA:   3'- -CGUUGAcaa------AGCCGGUgGUGC-AGCUG- -5'
27573 5' -52.3 NC_005882.1 + 31226 0.66 0.788173
Target:  5'- gGCAagacGCUGUaucCGGCgCAggucgaacgcguCCugGUCGACa -3'
miRNA:   3'- -CGU----UGACAaa-GCCG-GU------------GGugCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 12356 0.66 0.777782
Target:  5'- gGCAacGCUGgUUCGGCCA---UGUCGAg -3'
miRNA:   3'- -CGU--UGACaAAGCCGGUgguGCAGCUg -5'
27573 5' -52.3 NC_005882.1 + 30839 0.66 0.767226
Target:  5'- -gAGCUGggucaugCGGCCauguuGCCGCG-CGACc -3'
miRNA:   3'- cgUUGACaaa----GCCGG-----UGGUGCaGCUG- -5'
27573 5' -52.3 NC_005882.1 + 29958 0.66 0.767226
Target:  5'- cGCGGCgg---CGGCUACCAaaccgaaGUCGAg -3'
miRNA:   3'- -CGUUGacaaaGCCGGUGGUg------CAGCUg -5'
27573 5' -52.3 NC_005882.1 + 23425 0.66 0.760818
Target:  5'- aGCAGCUcGUcggcgucacgggcgUCGaGCgGCCGCuGUCGGCg -3'
miRNA:   3'- -CGUUGA-CAa-------------AGC-CGgUGGUG-CAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 27600 0.66 0.756517
Target:  5'- gGCGACgcagGccgCGGCCGCgGCGUCccuGCa -3'
miRNA:   3'- -CGUUGa---CaaaGCCGGUGgUGCAGc--UG- -5'
27573 5' -52.3 NC_005882.1 + 32057 0.66 0.745669
Target:  5'- uCGACcGgcgUCGGCgAUCggACGUCGACg -3'
miRNA:   3'- cGUUGaCaa-AGCCGgUGG--UGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 24505 0.66 0.745669
Target:  5'- cGCAGgUGUggggUUaGCCGCCgAUGUUGGCg -3'
miRNA:   3'- -CGUUgACAa---AGcCGGUGG-UGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 5040 0.67 0.723606
Target:  5'- gGCAaggcACUGccgUUCGGCgGCCGucUCGACc -3'
miRNA:   3'- -CGU----UGACa--AAGCCGgUGGUgcAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 12575 0.67 0.712419
Target:  5'- gGCGGCUGgcgCGGUCGCUuuCuUCGGCg -3'
miRNA:   3'- -CGUUGACaaaGCCGGUGGu-GcAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 31611 0.67 0.701144
Target:  5'- gGCAAC----UCGGCuCGCU-CGUCGACg -3'
miRNA:   3'- -CGUUGacaaAGCCG-GUGGuGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 18972 0.67 0.701144
Target:  5'- cCGAUcGUcaUCGGCCAuCCGCG-CGACa -3'
miRNA:   3'- cGUUGaCAa-AGCCGGU-GGUGCaGCUG- -5'
27573 5' -52.3 NC_005882.1 + 29860 0.67 0.689796
Target:  5'- gGCGACacgaagcUGGCCGCCgguGCGUCGAUc -3'
miRNA:   3'- -CGUUGacaaa--GCCGGUGG---UGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 25389 0.68 0.678388
Target:  5'- cGCAcgacGCUGaauggccUCGGCCGCguCGcCGACg -3'
miRNA:   3'- -CGU----UGACaa-----AGCCGGUGguGCaGCUG- -5'
27573 5' -52.3 NC_005882.1 + 18330 0.68 0.66693
Target:  5'- gGCgAGCUGaccgCGGCCGCguCGCGUCG-Ca -3'
miRNA:   3'- -CG-UUGACaaa-GCCGGUG--GUGCAGCuG- -5'
27573 5' -52.3 NC_005882.1 + 31077 0.68 0.66693
Target:  5'- cGCAGCg----CGGCUcccaccggcggAUCGCGUCGACc -3'
miRNA:   3'- -CGUUGacaaaGCCGG-----------UGGUGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 1512 0.68 0.663486
Target:  5'- uGCGAUUGcUUUCGuguccuggucgaucGCCGCaCGgGUCGACg -3'
miRNA:   3'- -CGUUGAC-AAAGC--------------CGGUG-GUgCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 31622 0.68 0.643921
Target:  5'- aGCcuGCgGUUUCGcacgucGCgGCCACGUCGAUc -3'
miRNA:   3'- -CGu-UGaCAAAGC------CGgUGGUGCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.